Build:
- 0
2024-09-12 08:35.54: New job: Voodoo prep molenc.5.0.1; 5e51a8f929d4d14e59811a92328e5c0a 2024-09-12 08:35.54: Waiting for resource in pool OCluster 2024-09-12 20:14.14: Waiting for worker… 2024-09-12 20:16.17: Got resource from pool OCluster 2024-09-12 20:16.17: Using cache hint "docs-universe-prep-4.14.2" To reproduce locally: cat > prep.spec <<'END-OF-SPEC' ((build tools ((from ocaml/opam:debian-12-ocaml-4.14@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")))) (from ocaml/opam:debian-12-ocaml-4.14@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (shell "sudo mkdir /src")) (copy (src packages) (dst /src/packages)) (copy (src repo) (dst /src/repo)) (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) (run (shell "opam repo remove default && opam repo add opam /src")) (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.16.0 ocamlfind.1.9.6")) (env DUNE_CACHE enabled) (env DUNE_CACHE_TRANSPORT direct) (env DUNE_CACHE_DUPLICATION copy) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy molenc.5.0.1 parmap.1.2.5 ocamlfind.1.9.6 num.1.5-1 minicli.5.0.2 dune-configurator.3.16.0 dune.3.16.0 dolog.4.0.0 csexp.1.5.2 conf-rdkit.1 conf-python-3.9.0.0 camlp-streams.5.0.1 bst.7.1.0 batteries.3.8.0 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) (run (shell "opam exec -- ~/voodoo-prep -u molenc:5e51a8f929d4d14e59811a92328e5c0a,dolog:6cb2d5658864a6c9bc1fbc226141feed,bst:5f68e9de055328ffb12236277c43a66a")) (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.986124') && (for DATA in prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0,bst.7.1.0-5f68e9de055328ffb12236277c43a66a,bst.7.1.0 prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0,dolog.4.0.0-6cb2d5658864a6c9bc1fbc226141feed,dolog.4.0.0 prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1,molenc.5.0.1-5e51a8f929d4d14e59811a92328e5c0a,molenc.5.0.1; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0,bst.7.1.0-5f68e9de055328ffb12236277c43a66a,bst.7.1.0 prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0,dolog.4.0.0-6cb2d5658864a6c9bc1fbc226141feed,dolog.4.0.0 prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1,molenc.5.0.1-5e51a8f929d4d14e59811a92328e5c0a,molenc.5.0.1; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0,bst.7.1.0-5f68e9de055328ffb12236277c43a66a,bst.7.1.0 prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0,dolog.4.0.0-6cb2d5658864a6c9bc1fbc226141feed,dolog.4.0.0 prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1,molenc.5.0.1-5e51a8f929d4d14e59811a92328e5c0a,molenc.5.0.1; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) ) END-OF-SPEC ocluster-client submit-obuilder https://github.com/ocaml/opam-repository.git 545557a0078aa899c3c9081c5f58a256ddfc2249 --local-file prep.spec \ --pool linux-x86_64 --connect ocluster-submission.cap --cache-hint docs-universe-prep-4.14.2 \ --secret ssh_privkey:id_rsa --secret ssh_pubkey:id_rsa.pub--secret ssh_config:ssh_config 2024-09-12 20:16.17: RETRYING: 2024-09-12/083554-voodoo-prep-0a1e8a Number of retries: 0 (retriable error condition) Building on asteria.caelum.ci.dev All commits already cached Updating files: 67% (21283/31656) Updating files: 68% (21527/31656) Updating files: 69% (21843/31656) Updating files: 70% (22160/31656) Updating files: 71% (22476/31656) Updating files: 72% (22793/31656) Updating files: 73% (23109/31656) Updating files: 74% (23426/31656) Updating files: 75% (23742/31656) Updating files: 76% (24059/31656) Updating files: 77% (24376/31656) Updating files: 78% (24692/31656) Updating files: 79% (25009/31656) Updating files: 80% (25325/31656) Updating files: 81% (25642/31656) Updating files: 82% (25958/31656) Updating files: 83% (26275/31656) Updating files: 84% (26592/31656) Updating files: 85% (26908/31656) Updating files: 86% (27225/31656) Updating files: 87% (27541/31656) Updating files: 88% (27858/31656) Updating files: 89% (28174/31656) Updating files: 90% (28491/31656) Updating files: 91% (28807/31656) Updating files: 92% (29124/31656) Updating files: 93% (29441/31656) Updating files: 94% (29757/31656) Updating files: 95% (30074/31656) Updating files: 96% (30390/31656) Updating files: 97% (30707/31656) Updating files: 98% (31023/31656) Updating files: 99% (31340/31656) Updating files: 100% (31656/31656) Updating files: 100% (31656/31656), done. HEAD is now at 545557a007 Moved num patch to separate 1.5-1 package version (build "tools" …) (from ocaml/opam:debian-12-ocaml-4.14@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1) Unable to find image 'ocaml/opam:debian-12-ocaml-4.14@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1' locally docker.io/ocaml/opam@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1: Pulling from ocaml/opam 5bece21b072e: Pulling fs layer 5bece21b072e: Verifying Checksum 5bece21b072e: Download complete 5bece21b072e: Pull complete Digest: sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1 Status: Downloaded newer image for ocaml/opam@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1 2024-09-12 20:10.03 ---> using "103a548bcf08062184789f8399ddfc3128a2d5d426168f6d2c8435f8ce1ce572" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 20:10.03 ---> using "b735425389b73ff0dbaabb86e65c55ba3d4affc0ec07062c4ba9fb8523aca05a" from cache /home/opam: (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 0s (766 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libpkgconf3 pkgconf pkgconf-bin Suggested packages: m4-doc The following NEW packages will be installed: libpkgconf3 m4 pkg-config pkgconf pkgconf-bin 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 392 kB of archives. After this operation, 969 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 392 kB in 0s (7424 kB/s) Selecting previously unselected package libpkgconf3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18733 files and directories currently installed.) Preparing to unpack .../libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../pkgconf_1.8.1-1_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Setting up m4 (1.4.19-3) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 2024-09-12 20:10.03 ---> using "64027e071d7f4bb79a519ab4cf43cd8d13e54fe5188051a605e9293619bec9b3" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 This will pin the following packages: voodoo-prep, voodoo-lib, voodoo-gen, voodoo-do. Continue? [Y/n] y Package voodoo-prep does not exist, create as a NEW package? [Y/n] y [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-prep is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-lib does not exist, create as a NEW package? [Y/n] y [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-lib is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-gen does not exist, create as a NEW package? [Y/n] y [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-gen is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-do does not exist, create as a NEW package? [Y/n] y [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-do is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # No extra OS packages requirements found. # All required OS packages found. # Now letting opam install the packages <><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><> [voodoo-prep.~dev] no changes from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 The following actions will be performed: - install ocamlbuild 0.15.0 [required by bos] - install dune 3.16.0 [required by voodoo-prep] - install ocamlfind 1.9.6 [required by bos] - install cmdliner 1.3.0 [required by voodoo-prep] - install seq base [required by re] - install swhid_core 0.1 [required by opam-core] - install stdlib-shims 0.3.0 [required by ocamlgraph, sha] - install opam-file-format 2.1.6 [required by opam-format] - install topkg 1.0.7 [required by bos] - install re 1.12.0 [required by opam-format] - install sha 1.15.4 [required by opam-core] - install ocamlgraph 2.1.0 [required by opam-core] - install uutf 1.0.3 [required by opam-core] - install rresult 0.7.0 [required by bos] - install fmt 0.9.0 [required by bos] - install astring 0.8.5 [required by bos] - install jsonm 1.0.2 [required by opam-core] - install logs 0.7.0 [required by bos] - install fpath 0.7.3 [required by voodoo-prep] - install opam-core 2.2.1 [required by opam-format] - install bos 0.2.1 [required by voodoo-prep] - install opam-format 2.2.1 [required by voodoo-prep] - install voodoo-prep ~dev* ===== 23 to install ===== <><> Gathering sources ><><><><><><><><><><><><><><><><><><><><><><><><><><><><> [astring.0.8.5] found in cache [bos.0.2.1] found in cache [cmdliner.1.3.0] found in cache [dune.3.16.0] found in cache [fmt.0.9.0] found in cache [fpath.0.7.3] found in cache [jsonm.1.0.2] found in cache [logs.0.7.0] found in cache [ocamlbuild.0.15.0] found in cache [ocamlfind.1.9.6] found in cache [ocamlgraph.2.1.0] found in cache [opam-core.2.2.1] found in cache [opam-file-format.2.1.6] found in cache [opam-format.2.2.1] found in cache [re.1.12.0] found in cache [rresult.0.7.0] found in cache [sha.1.15.4] found in cache [stdlib-shims.0.3.0] found in cache [swhid_core.0.1] found in cache [topkg.1.0.7] found in cache [uutf.1.0.3] found in cache [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> installed seq.base -> installed cmdliner.1.3.0 -> installed ocamlfind.1.9.6 -> installed ocamlbuild.0.15.0 -> installed topkg.1.0.7 -> installed rresult.0.7.0 -> installed uutf.1.0.3 -> installed fmt.0.9.0 -> installed astring.0.8.5 -> installed jsonm.1.0.2 -> installed fpath.0.7.3 -> installed logs.0.7.0 -> installed dune.3.16.0 -> installed bos.0.2.1 -> installed stdlib-shims.0.3.0 -> installed swhid_core.0.1 -> installed opam-file-format.2.1.6 -> installed re.1.12.0 -> installed sha.1.15.4 -> installed ocamlgraph.2.1.0 -> installed opam-core.2.2.1 -> installed opam-format.2.2.1 -> installed voodoo-prep.~dev Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 20:10.03 ---> using "4b3eae20ee556ce466265d261fd5d7184b7506cfcf8217eea177582bdd289d8b" from cache /home/opam: (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")) 2024-09-12 20:10.03 ---> using "ff9243a4acf95fb20c4e62f411801f15f8ec3c4e6fcc150de31a9042ea281b68" from cache 2024-09-12 20:10.03 --> finished "tools" (from ocaml/opam:debian-12-ocaml-4.14@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1) Unable to find image 'ocaml/opam:debian-12-ocaml-4.14@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1' locally docker.io/ocaml/opam@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1: Pulling from ocaml/opam 5bece21b072e: Pulling fs layer 5bece21b072e: Verifying Checksum 5bece21b072e: Download complete 5bece21b072e: Pull complete Digest: sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1 Status: Downloaded newer image for ocaml/opam@sha256:2135d0c56fc438ebc9377f99b020c06d4ecd43611be356b669914fea73ab2be1 2024-09-12 20:10.03 ---> using "103a548bcf08062184789f8399ddfc3128a2d5d426168f6d2c8435f8ce1ce572" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 20:10.03 ---> using "b735425389b73ff0dbaabb86e65c55ba3d4affc0ec07062c4ba9fb8523aca05a" from cache /home/opam: (run (shell "sudo mkdir /src")) 2024-09-12 20:10.03 ---> using "589fc247a47cee4820aea953ca0c6137d5c05903e8d36d67782083bf9b53dcd0" from cache /home/opam: (copy (src packages) (dst /src/packages)) 2024-09-12 20:10.04 ---> using "bd6ae1f0e021ea307e594eccdc2983b3cef4423f6a1ba3e63a4a45309ac535cc" from cache /home/opam: (copy (src repo) (dst /src/repo)) 2024-09-12 20:10.04 ---> using "7176829cd8405545217834e4da7ae21101875b1095cf06a9ef4771ab070dd9a5" from cache /home/opam: (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) Configuring from /home/opam/.opamrc and then from built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted. You may want to back it up before going further. Continue? [Y/n] y Format upgrade done. <><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><> [default] synchronised from file:///home/opam/opam-repository 2024-09-12 20:10.04 ---> using "2165b453d675329adbdd8a34e2efb36486102de17f9f7646889706058dd705f3" from cache /home/opam: (run (shell "opam repo remove default && opam repo add opam /src")) Repositories removed from the selections of switch 4.14. Use '--all' to forget about them altogether. [opam] Initialised [NOTE] Repository opam has been added to the selections of switch 4.14 only. Run `opam repository add opam --all-switches|--set-default' to use it in all existing switches, or in newly created switches, respectively. 2024-09-12 20:10.04 ---> using "21e8df1bb29a8bc922ccc1e12388d03a672a539d905ea59795aeb1f1a71ed334" from cache /home/opam: (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) 2024-09-12 20:10.04 ---> using "b97cd21a1d75c2505aabca80086b6b4394dc6845d995a1fa5d6e7be806387b60" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.16.0 ocamlfind.1.9.6")) The following actions will be performed: - install dune 3.16.0 - install ocamlfind 1.9.6 ===== 2 to install ===== <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved ocamlfind.1.9.6 (cached) -> retrieved dune.3.16.0 (cached) -> installed ocamlfind.1.9.6 -> installed dune.3.16.0 Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 20:10.37 ---> saved as "9c49a0e0bec40fe05a172619c438fbd66542e14259862ddf39bc6c48b43c1abd" /home/opam: (env DUNE_CACHE enabled) /home/opam: (env DUNE_CACHE_TRANSPORT direct) /home/opam: (env DUNE_CACHE_DUPLICATION copy) /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy molenc.5.0.1 parmap.1.2.5 ocamlfind.1.9.6 num.1.5-1 minicli.5.0.2 dune-configurator.3.16.0 dune.3.16.0 dolog.4.0.0 csexp.1.5.2 conf-rdkit.1 conf-python-3.9.0.0 camlp-streams.5.0.1 bst.7.1.0 batteries.3.8.0 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 0s (975 kB/s) Reading package lists... Building dependency tree... Reading state information... All packages are up to date. Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y The following actions will be performed: - recompile opam-depext 1.2.3 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved opam-depext.1.2.3 (cached) -> removed opam-depext.1.2.3 -> installed opam-depext.1.2.3 Done. <><> opam-depext.1.2.3 installed successfully <><><><><><><><><><><><><><><><><> => opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead # Run eval $(opam env) to update the current shell environment <><> Carrying on to "opam depext -viy molenc.5.0.1 parmap.1.2.5 ocamlfind.1.9.6 num.1.5-1 minicli.5.0.2 dune-configurator.3.16.0 dune.3.16.0 dolog.4.0.0 csexp.1.5.2 conf-rdkit.1 conf-python-3.9.0.0 camlp-streams.5.0.1 bst.7.1.0 batteries.3.8.0" Since version 2.1, opam now handles external dependencies alongside OCaml ones, and the `depext` plugin interface is provided for backwards compatibility only. Consider using your usual `opam install` command to install both OCaml and system dependencies, or `opam install <pkg> --depext-only` if you want to only install external dependencies. # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # The following system packages are needed: librdkit-dev python3 python3-rdkit [NOTE] Package dune is already installed (current version is 3.16.0). [NOTE] Package ocamlfind is already installed (current version is 1.9.6). The following actions will be performed: - install conf-python-3 9.0.0 - install dolog 4.0.0 - install minicli 5.0.2 - install csexp 1.5.2 - install conf-rdkit 1 - install camlp-streams 5.0.1 - install num 1.5-1 - install dune-configurator 3.16.0 - install batteries 3.8.0 - install parmap 1.2.5 - install bst 7.1.0 - install molenc 5.0.1 ===== 12 to install ===== The following system packages will first need to be installed: librdkit-dev python3 python3-rdkit <><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><> Let opam run your package manager to install the required system packages? (answer 'n' for other options) [Y/n] y + /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "librdkit-dev" "python3" "python3-rdkit" - debconf: delaying package configuration, since apt-utils is not installed - Selecting previously unselected package libpython3.11-minimal:amd64. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18733 files and directories currently installed.) - Preparing to unpack .../libpython3.11-minimal_3.11.2-6+deb12u3_amd64.deb ... - Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u3) ... - Selecting previously unselected package python3.11-minimal. - Preparing to unpack .../python3.11-minimal_3.11.2-6+deb12u3_amd64.deb ... - Unpacking python3.11-minimal (3.11.2-6+deb12u3) ... - Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u3) ... - Setting up python3.11-minimal (3.11.2-6+deb12u3) ... - Selecting previously unselected package python3-minimal. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19040 files and directories currently installed.) - Preparing to unpack .../python3-minimal_3.11.2-1+b1_amd64.deb ... - Unpacking python3-minimal (3.11.2-1+b1) ... - Selecting previously unselected package media-types. - Preparing to unpack .../media-types_10.0.0_all.deb ... - Unpacking media-types (10.0.0) ... - Selecting previously unselected package libpython3.11-stdlib:amd64. - Preparing to unpack .../libpython3.11-stdlib_3.11.2-6+deb12u3_amd64.deb ... - Unpacking libpython3.11-stdlib:amd64 (3.11.2-6+deb12u3) ... - Selecting previously unselected package python3.11. - Preparing to unpack .../python3.11_3.11.2-6+deb12u3_amd64.deb ... - Unpacking python3.11 (3.11.2-6+deb12u3) ... - Selecting previously unselected package libpython3-stdlib:amd64. - Preparing to unpack .../libpython3-stdlib_3.11.2-1+b1_amd64.deb ... - Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... - Setting up python3-minimal (3.11.2-1+b1) ... - Selecting previously unselected package python3. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19450 files and directories currently installed.) - Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... - Unpacking python3 (3.11.2-1+b1) ... - Selecting previously unselected package fonts-freefont-ttf. - Preparing to unpack .../01-fonts-freefont-ttf_20120503-10_all.deb ... - Unpacking fonts-freefont-ttf (20120503-10) ... - Selecting previously unselected package libblas3:amd64. - Preparing to unpack .../02-libblas3_3.11.0-2_amd64.deb ... - Unpacking libblas3:amd64 (3.11.0-2) ... - Selecting previously unselected package libboost-iostreams1.74.0:amd64. - Preparing to unpack .../03-libboost-iostreams1.74.0_1.74.0+ds1-21_amd64.deb ... - Unpacking libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ... - Selecting previously unselected package libboost-python1.74.0. - Preparing to unpack .../04-libboost-python1.74.0_1.74.0+ds1-21_amd64.deb ... - Unpacking libboost-python1.74.0 (1.74.0+ds1-21) ... - Selecting previously unselected package libboost-serialization1.74.0:amd64. - Preparing to unpack .../05-libboost-serialization1.74.0_1.74.0+ds1-21_amd64.deb ... - Unpacking libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ... - Selecting previously unselected package libpixman-1-0:amd64. - Preparing to unpack .../06-libpixman-1-0_0.42.2-1_amd64.deb ... - Unpacking libpixman-1-0:amd64 (0.42.2-1) ... - Selecting previously unselected package libxcb-render0:amd64. - Preparing to unpack .../07-libxcb-render0_1.15-1_amd64.deb ... - Unpacking libxcb-render0:amd64 (1.15-1) ... - Selecting previously unselected package libxcb-shm0:amd64. - Preparing to unpack .../08-libxcb-shm0_1.15-1_amd64.deb ... - Unpacking libxcb-shm0:amd64 (1.15-1) ... - Selecting previously unselected package libxrender1:amd64. - Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_amd64.deb ... - Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... - Selecting previously unselected package libcairo2:amd64. - Preparing to unpack .../10-libcairo2_1.16.0-7_amd64.deb ... - Unpacking libcairo2:amd64 (1.16.0-7) ... - Selecting previously unselected package libcoordgen3:amd64. - Preparing to unpack .../11-libcoordgen3_3.0.1-1_amd64.deb ... - Unpacking libcoordgen3:amd64 (3.0.1-1) ... - Selecting previously unselected package libgfortran5:amd64. - Preparing to unpack .../12-libgfortran5_12.2.0-14_amd64.deb ... - Unpacking libgfortran5:amd64 (12.2.0-14) ... - Selecting previously unselected package liblapack3:amd64. - Preparing to unpack .../13-liblapack3_3.11.0-2_amd64.deb ... - Unpacking liblapack3:amd64 (3.11.0-2) ... - Selecting previously unselected package libmaeparser1:amd64. - Preparing to unpack .../14-libmaeparser1_1.3.0-1_amd64.deb ... - Unpacking libmaeparser1:amd64 (1.3.0-1) ... - Selecting previously unselected package libpython3.11:amd64. - Preparing to unpack .../15-libpython3.11_3.11.2-6+deb12u3_amd64.deb ... - Unpacking libpython3.11:amd64 (3.11.2-6+deb12u3) ... - Selecting previously unselected package librdkit1. - Preparing to unpack .../16-librdkit1_202209.3-1_amd64.deb ... - Unpacking librdkit1 (202209.3-1) ... - Selecting previously unselected package librdkit-dev. - Preparing to unpack .../17-librdkit-dev_202209.3-1_amd64.deb ... - Unpacking librdkit-dev (202209.3-1) ... - Selecting previously unselected package python3-pkg-resources. - Preparing to unpack .../18-python3-pkg-resources_66.1.1-1_all.deb ... - Unpacking python3-pkg-resources (66.1.1-1) ... - Selecting previously unselected package python3-numpy. - Preparing to unpack .../19-python3-numpy_1%3a1.24.2-1+deb12u1_amd64.deb ... - Unpacking python3-numpy (1:1.24.2-1+deb12u1) ... - Selecting previously unselected package rdkit-data. - Preparing to unpack .../20-rdkit-data_202209.3-1_all.deb ... - Unpacking rdkit-data (202209.3-1) ... - Selecting previously unselected package python3-rdkit. - Preparing to unpack .../21-python3-rdkit_202209.3-1_amd64.deb ... - Unpacking python3-rdkit (202209.3-1) ... - Setting up media-types (10.0.0) ... - Setting up libpixman-1-0:amd64 (0.42.2-1) ... - Setting up libxrender1:amd64 (1:0.9.10-1.1) ... - Setting up libxcb-render0:amd64 (1.15-1) ... - Setting up libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ... - Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u3) ... - Setting up fonts-freefont-ttf (20120503-10) ... - Setting up libxcb-shm0:amd64 (1.15-1) ... - Setting up rdkit-data (202209.3-1) ... - Setting up libcairo2:amd64 (1.16.0-7) ... - Setting up libmaeparser1:amd64 (1.3.0-1) ... - Setting up libblas3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode - Setting up libgfortran5:amd64 (12.2.0-14) ... - Setting up libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ... - Setting up libcoordgen3:amd64 (3.0.1-1) ... - Setting up libboost-python1.74.0 (1.74.0+ds1-21) ... - Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... - Setting up python3.11 (3.11.2-6+deb12u3) ... - Setting up liblapack3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode - Setting up libpython3.11:amd64 (3.11.2-6+deb12u3) ... - Setting up librdkit1 (202209.3-1) ... - Setting up python3 (3.11.2-1+b1) ... - running python rtupdate hooks for python3.11... - running python post-rtupdate hooks for python3.11... - Setting up librdkit-dev (202209.3-1) ... - Setting up python3-pkg-resources (66.1.1-1) ... - Setting up python3-numpy (1:1.24.2-1+deb12u1) ... - Setting up python3-rdkit (202209.3-1) ... - Processing triggers for libc-bin (2.36-9+deb12u8) ... <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> Processing 1/36: Processing 2/36: Processing 3/36: -> retrieved camlp-streams.5.0.1 (cached) -> retrieved conf-python-3.9.0.0 (cached) Processing 4/36: -> retrieved conf-rdkit.1 (cached) Processing 5/36: Processing 6/36: Processing 7/36: [camlp-streams: dune build] Processing 8/36: [camlp-streams: dune build] [conf-python-3: python3 test.py] Processing 9/36: [camlp-streams: dune build] [conf-python-3: python3 test.py] [conf-rdkit: sh] -> retrieved batteries.3.8.0 (cached) Processing 10/36: [camlp-streams: dune build] [conf-python-3: python3 test.py] [conf-rdkit: sh] -> retrieved bst.7.1.0 (cached) Processing 11/36: [camlp-streams: dune build] [conf-python-3: python3 test.py] [conf-rdkit: sh] -> retrieved csexp.1.5.2 (cached) Processing 12/36: [camlp-streams: dune build] [conf-python-3: python3 test.py] [conf-rdkit: sh] Processing 13/36: [camlp-streams: dune build] [conf-python-3: python3 test.py] [conf-rdkit: sh] [csexp: dune build] - python-3 OK -> compiled conf-python-3.9.0.0 Processing 13/36: [camlp-streams: dune build] [conf-rdkit: sh] [csexp: dune build] -> installed conf-python-3.9.0.0 Processing 14/36: [camlp-streams: dune build] [conf-rdkit: sh] [csexp: dune build] Processing 14/36: [camlp-streams: dune build] [conf-rdkit: ./test] [csexp: dune build] -> retrieved dolog.4.0.0 (cached) Processing 15/36: [camlp-streams: dune build] [conf-rdkit: ./test] [csexp: dune build] Processing 16/36: [camlp-streams: dune build] [conf-rdkit: ./test] [csexp: dune build] [dolog: dune build] -> retrieved minicli.5.0.2 (cached) Processing 17/36: [camlp-streams: dune build] [conf-rdkit: ./test] [csexp: dune build] [dolog: dune build] Processing 18/36: [camlp-streams: dune build] [conf-rdkit: ./test] [csexp: dune build] [dolog: dune build] [minicli: dune build] - 2022.09.3 -> compiled conf-rdkit.1 Processing 18/36: [camlp-streams: dune build] [csexp: dune build] [dolog: dune build] [minicli: dune build] -> installed conf-rdkit.1 Processing 19/36: [camlp-streams: dune build] [csexp: dune build] [dolog: dune build] [minicli: dune build] -> retrieved num.1.5-1 (cached) Processing 20/36: [camlp-streams: dune build] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: patch] applying num-in-findlib-dir.patch Processing 21/36: [camlp-streams: dune build] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: patch] -> retrieved parmap.1.2.5 (cached) Processing 21/36: [camlp-streams: dune build] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-legacy] -> retrieved molenc.5.0.1 (cached) -> compiled camlp-streams.5.0.1 Processing 21/36: [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-legacy] -> installed camlp-streams.5.0.1 Processing 22/36: [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-legacy] -> compiled csexp.1.5.2 Processing 22/36: [dolog: dune build] [minicli: dune build] [num: make opam-legacy] -> installed csexp.1.5.2 Processing 23/36: [dolog: dune build] [minicli: dune build] [num: make opam-legacy] -> compiled dolog.4.0.0 Processing 23/36: [minicli: dune build] [num: make opam-legacy] -> installed dolog.4.0.0 Processing 24/36: [minicli: dune build] [num: make opam-legacy] -> compiled minicli.5.0.2 Processing 24/36: [num: make opam-legacy] -> installed minicli.5.0.2 Processing 25/36: [num: make opam-legacy] -> retrieved dune-configurator.3.16.0 (cached) Processing 26/36: [dune-configurator: rm] [num: make opam-legacy] - /usr/bin/make -C src all - make[1]: Entering directory '/home/opam/.opam/4.14/.opam-switch/build/num.1.5-1/src' - ocamlc -ccopt -DBNG_ARCH_amd64 -c bng.c - ocamlc -ccopt -DBNG_ARCH_amd64 -c nat_stubs.c - ocamlmklib -oc nums bng.o nat_stubs.o - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml - ocamlmklib -o nums -oc nums -linkall int_misc.cmo nat.cmo big_int.cmo arith_flags.cmo ratio.cmo num.cmo arith_status.cmo - cp ../toplevel/num_top_printers.mli ../toplevel/num_top.mli ../toplevel/num_top_printers.ml ../toplevel/num_top.ml . - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -a -o num_top.cma num_top_printers.cmo num_top.cmo - echo 'version = "1.6~dev"' > META.top - cat META.num-top.in >> META.top - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml - ocamlmklib -o nums -oc nums -linkall int_misc.cmx nat.cmx big_int.cmx arith_flags.cmx ratio.cmx num.cmx arith_status.cmx - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -I . -shared -o nums.cmxs nums.cmxa - make[1]: Leaving directory '/home/opam/.opam/4.14/.opam-switch/build/num.1.5-1/src' - cp src/num-legacy.install num.install -> compiled num.1.5-1 Processing 26/36: [dune-configurator: rm] -> installed num.1.5-1 Processing 27/36: [dune-configurator: rm] Processing 28/36: [batteries: dune build] [dune-configurator: rm] Processing 28/36: [batteries: dune build] [dune-configurator: dune build] -> compiled dune-configurator.3.16.0 Processing 28/36: [batteries: dune build] -> installed dune-configurator.3.16.0 Processing 29/36: [batteries: dune build] Processing 30/36: [batteries: dune build] [parmap: dune build] -> compiled parmap.1.2.5 Processing 30/36: [batteries: dune build] -> installed parmap.1.2.5 Processing 31/36: [batteries: dune build] + /home/opam/.opam/4.14/bin/dune "build" "-p" "batteries" "-j" "39" "@install" (CWD=/home/opam/.opam/4.14/.opam-switch/build/batteries.3.8.0) -> compiled batteries.3.8.0 -> installed batteries.3.8.0 Processing 33/36: [bst: dune build] + /home/opam/.opam/4.14/bin/dune "build" "-p" "bst" "-j" "39" (CWD=/home/opam/.opam/4.14/.opam-switch/build/bst.7.1.0) -> compiled bst.7.1.0 -> installed bst.7.1.0 Processing 35/36: [molenc: dune build] + /home/opam/.opam/4.14/bin/dune "build" "-p" "molenc" "-j" "39" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.1) - (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.molenc.objs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -no-alias-deps -open Molenc -o src/.molenc.objs/byte/molenc__Atom_env.cmo -c -impl src/atom_env.ml) - File "src/atom_env.ml", line 30, characters 16-32: - 30 | let strings = BatString.nsplit s ~by:"," in - ^^^^^^^^^^^^^^^^ - Alert deprecated: BatString.nsplit - Use split_on_string instead. - File "src/atom_env.ml", line 50, characters 22-38: - 50 | let layer_strings = BatString.nsplit s ~by:";" in - ^^^^^^^^^^^^^^^^ - Alert deprecated: BatString.nsplit - Use split_on_string instead. - (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.molenc.objs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -no-alias-deps -open Molenc -o src/.molenc.objs/byte/molenc__MyList.cmo -c -impl src/myList.ml) - File "src/myList.ml", line 27, characters 14-30: - 27 | map of_str (BatString.nsplit s' ~by:";") - ^^^^^^^^^^^^^^^^ - Alert deprecated: BatString.nsplit - Use split_on_string instead. - (cd _build/default && /home/opam/.opam/4.14/bin/ocamlc.opt -w -40 -g -bin-annot -I src/.molenc.objs/byte -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -no-alias-deps -open Molenc -o src/.molenc.objs/byte/molenc__Ap_types.cmo -c -impl src/ap_types.ml) - File "src/ap_types.ml", line 54, characters 25-41: - 54 | let dist_strings = BatString.nsplit line ~by:" " in - ^^^^^^^^^^^^^^^^ - Alert deprecated: BatString.nsplit - Use split_on_string instead. - (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.molenc.objs/byte -I src/.molenc.objs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -intf-suffix .ml -no-alias-deps -open Molenc -o src/.molenc.objs/native/molenc__Atom_env.cmx -c -impl src/atom_env.ml) - File "src/atom_env.ml", line 30, characters 16-32: - 30 | let strings = BatString.nsplit s ~by:"," in - ^^^^^^^^^^^^^^^^ - Alert deprecated: BatString.nsplit - Use split_on_string instead. - File "src/atom_env.ml", line 50, characters 22-38: - 50 | let layer_strings = BatString.nsplit s ~by:";" in - ^^^^^^^^^^^^^^^^ - Alert deprecated: BatString.nsplit - Use split_on_string instead. - (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.molenc.objs/byte -I src/.molenc.objs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -intf-suffix .ml -no-alias-deps -open Molenc -o src/.molenc.objs/native/molenc__MyList.cmx -c -impl src/myList.ml) - File "src/myList.ml", line 27, characters 14-30: - 27 | map of_str (BatString.nsplit s' ~by:";") - ^^^^^^^^^^^^^^^^ - Alert deprecated: BatString.nsplit - Use split_on_string instead. - (cd _build/default && /home/opam/.opam/4.14/bin/ocamlopt.opt -w -40 -g -I src/.molenc.objs/byte -I src/.molenc.objs/native -I /home/opam/.opam/4.14/lib/batteries -I /home/opam/.opam/4.14/lib/batteries/unthreaded -I /home/opam/.opam/4.14/lib/bst -I /home/opam/.opam/4.14/lib/camlp-streams -I /home/opam/.opam/4.14/lib/dolog -I /home/opam/.opam/4.14/lib/num -I /home/opam/.opam/4.14/lib/ocaml/threads -intf-suffix .ml -no-alias-deps -open Molenc -o src/.molenc.objs/native/molenc__Ap_types.cmx -c -impl src/ap_types.ml) - File "src/ap_types.ml", line 54, characters 25-41: - 54 | let dist_strings = BatString.nsplit line ~by:" " in - ^^^^^^^^^^^^^^^^ - Alert deprecated: BatString.nsplit - Use split_on_string instead. -> compiled molenc.5.0.1 Processing 36/36: [molenc: cp] + /usr/bin/cp "bin/molenc_common.py" "/home/opam/.opam/4.14/bin/molenc_common.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.1) + /usr/bin/cp "bin/molenc_type_atoms.py" "/home/opam/.opam/4.14/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.1) + /usr/bin/cp "bin/molenc_scan.py" "/home/opam/.opam/4.14/bin/molenc_scan.py" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.1) + /usr/bin/cp "bin/molenc.sh" "/home/opam/.opam/4.14/bin/molenc.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.1) + /usr/bin/cp "bin/molenc_scan.sh" "/home/opam/.opam/4.14/bin/molenc_scan.sh" (CWD=/home/opam/.opam/4.14/.opam-switch/build/molenc.5.0.1) -> installed molenc.5.0.1 Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 20:12.13 ---> saved as "a235f3ceb0bec0bd3af65eb3c71640a3e0c15ed7a92f88a3350727932ce5f03f" /home/opam: (run (shell "opam exec -- ~/voodoo-prep -u molenc:5e51a8f929d4d14e59811a92328e5c0a,dolog:6cb2d5658864a6c9bc1fbc226141feed,bst:5f68e9de055328ffb12236277c43a66a")) 2024-09-12 20:12.15 ---> saved as "7110659586b2158818ffd3607a170b906cc4f7d5faeb346857f267ce5580fe13" /home/opam: (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.986124') && (for DATA in prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0,bst.7.1.0-5f68e9de055328ffb12236277c43a66a,bst.7.1.0 prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0,dolog.4.0.0-6cb2d5658864a6c9bc1fbc226141feed,dolog.4.0.0 prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1,molenc.5.0.1-5e51a8f929d4d14e59811a92328e5c0a,molenc.5.0.1; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0,bst.7.1.0-5f68e9de055328ffb12236277c43a66a,bst.7.1.0 prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0,dolog.4.0.0-6cb2d5658864a6c9bc1fbc226141feed,dolog.4.0.0 prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1,molenc.5.0.1-5e51a8f929d4d14e59811a92328e5c0a,molenc.5.0.1; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0,bst.7.1.0-5f68e9de055328ffb12236277c43a66a,bst.7.1.0 prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0,dolog.4.0.0-6cb2d5658864a6c9bc1fbc226141feed,dolog.4.0.0 prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1,molenc.5.0.1-5e51a8f929d4d14e59811a92328e5c0a,molenc.5.0.1; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) 0.986124 prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/doc/ prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/doc/bst/ prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/doc/bst/LICENSE prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/doc/bst/README.md prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/ prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/bst/ prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/bst/bst.ocamlobjinfo prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/bst/META prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/bst/bst.cmi prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/bst/bst.cmt prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/bst/bst__Bisec_tree.cmi prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/bst/bst__Bisec_tree.cmt prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/bst/bst__Bisec_tree.cmti prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/lib/bst/dune-package prep/universes/5f68e9de055328ffb12236277c43a66a/bst/7.1.0/opam prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/doc/ prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/doc/dolog/ prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/doc/dolog/CHANGES prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/doc/dolog/README.md prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/ prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/dolog/ prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/dolog/dolog.ocamlobjinfo prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/dolog/META prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/dolog/dolog.cmi prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/dolog/dolog.cmt prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/dolog/dolog__Log.cmi prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/dolog/dolog__Log.cmt prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/dolog/dolog__Log.cmti prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/lib/dolog/dune-package prep/universes/6cb2d5658864a6c9bc1fbc226141feed/dolog/4.0.0/opam prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/doc/ prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/doc/molenc/ prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/doc/molenc/LICENSE prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/doc/molenc/README.md prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/ prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/ prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc.ocamlobjinfo prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/META prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/dune-package prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Ap_types.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Ap_types.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Atom_env.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Atom_env.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Fingerprint.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Fingerprint.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__FpMol.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__FpMol.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__MSE_mol.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__MSE_mol.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Mini_mol.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Mini_mol.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__MyList.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__MyList.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Node.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Node.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Norm.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Norm.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__PiEltHA.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__PiEltHA.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Scale.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Scale.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Utls.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__Utls.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__WMH.cmi prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/lib/molenc/molenc__WMH.cmt prep/universes/5e51a8f929d4d14e59811a92328e5c0a/molenc/5.0.1/opam Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. HASHES:bst.7.1.0-5f68e9de055328ffb12236277c43a66a:46e2622e7de9e084cfdd37d8c26bf42d575385e9391316723849a2839ae418f3 HASHES:dolog.4.0.0-6cb2d5658864a6c9bc1fbc226141feed:1a25097bd5326c9587aaacc157f734319b6819de35aa8fa175a7354667cc03b7 HASHES:molenc.5.0.1-5e51a8f929d4d14e59811a92328e5c0a:ba8d84c1a78aa56ac1f923e5dc4818870ea60e609759f606c82c11fda2cc6c15 2024-09-12 20:12.17 ---> saved as "7682434caef03b403ef0908b3a5e060ed075b499a0d56e38d3e47cce062b00f2" Job succeeded 2024-09-12 20:19.55: molenc.5.0.1-5e51a8f929d4d14e59811a92328e5c0a -> ba8d84c1a78aa56ac1f923e5dc4818870ea60e609759f606c82c11fda2cc6c15 2024-09-12 20:19.55: dolog.4.0.0-6cb2d5658864a6c9bc1fbc226141feed -> 1a25097bd5326c9587aaacc157f734319b6819de35aa8fa175a7354667cc03b7 2024-09-12 20:19.55: bst.7.1.0-5f68e9de055328ffb12236277c43a66a -> 46e2622e7de9e084cfdd37d8c26bf42d575385e9391316723849a2839ae418f3 2024-09-12 20:19.55: Job succeeded