Build:
- 0
2024-09-12 08:35.52: New job: Voodoo prep lbvs_consent.2.0.0; 2a0f9533e66d8618b57a3abf651b6681 2024-09-12 08:35.52: Waiting for resource in pool OCluster 2024-09-12 19:08.58: Waiting for worker… 2024-09-12 19:27.52: Got resource from pool OCluster 2024-09-12 19:27.52: Using cache hint "docs-universe-prep-4.11.2" To reproduce locally: cat > prep.spec <<'END-OF-SPEC' ((build tools ((from ocaml/opam:debian-12-ocaml-4.11@sha256:7a3d58c501028d55318e8ea9416b7c488fb2b901d00e3eae4ea94bf5181476e7) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")))) (from ocaml/opam:debian-12-ocaml-4.11@sha256:7a3d58c501028d55318e8ea9416b7c488fb2b901d00e3eae4ea94bf5181476e7) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (shell "sudo mkdir /src")) (copy (src packages) (dst /src/packages)) (copy (src repo) (dst /src/repo)) (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) (run (shell "opam repo remove default && opam repo add opam /src")) (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.1.11.4 ocamlfind.1.9.6")) (env DUNE_CACHE disabled) (env DUNE_CACHE_TRANSPORT direct) (env DUNE_CACHE_DUPLICATION copy) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy lbvs_consent.2.0.0 topkg.1.0.7 stdlib-shims.0.3.0 seq.base result.1.5 qcheck-ounit.0.17 qcheck-core.0.17 qcheck.0.17 ppx_derivers.1.2.1 parmap.1.2.1 ounit2.2.2.6 ocplib-endian.1.2 ocamlfind.1.9.6 ocamlbuild.0.15.0 ocaml-migrate-parsetree.1.8.0 obuild.0.1.11 num.1.5-1 minivpt.2.0.0 lwt.5.7.0 logs.0.7.0 extunix.0.2.0 dune-configurator.1.0.0 dune.1.11.4 dolog.3.0 dokeysto_camltc.4.0.0 dokeysto.4.0.1 cppo.1.6.9 cpm.12.0.0 conf-zlib.1 conf-rdkit.1 conf-python-2-7.1.2 conf-pkg-config.3 conf-openbabel.0.1 conf-boost.1 conf-bash.1 conf-autoconf.0.2 camlzip.1.11 camltc.0.9.8 bitv.1.3 batteries.3.5.1 base-bytes.base 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) (run (shell "opam exec -- ~/voodoo-prep -u lbvs_consent:2a0f9533e66d8618b57a3abf651b6681,minivpt:a73493e7f03ea29e895e6e0748eac2ac,dokeysto_camltc:a25f644c5ca332f433ad4ca338c57ff8,cpm:867faaa1b22ddf468733f4185040840e,conf-openbabel:f10a8e6d5c7eddcd8c8d8cfb436aa5d4")) (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.468149') && (for DATA in prep/universes/f10a8e6d5c7eddcd8c8d8cfb436aa5d4/conf-openbabel/0.1,conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4,conf-openbabel.0.1 prep/universes/867faaa1b22ddf468733f4185040840e/cpm/12.0.0,cpm.12.0.0-867faaa1b22ddf468733f4185040840e,cpm.12.0.0 prep/universes/a25f644c5ca332f433ad4ca338c57ff8/dokeysto_camltc/4.0.0,dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8,dokeysto_camltc.4.0.0 prep/universes/a73493e7f03ea29e895e6e0748eac2ac/minivpt/2.0.0,minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac,minivpt.2.0.0 prep/universes/2a0f9533e66d8618b57a3abf651b6681/lbvs_consent/2.0.0,lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681,lbvs_consent.2.0.0; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/f10a8e6d5c7eddcd8c8d8cfb436aa5d4/conf-openbabel/0.1,conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4,conf-openbabel.0.1 prep/universes/867faaa1b22ddf468733f4185040840e/cpm/12.0.0,cpm.12.0.0-867faaa1b22ddf468733f4185040840e,cpm.12.0.0 prep/universes/a25f644c5ca332f433ad4ca338c57ff8/dokeysto_camltc/4.0.0,dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8,dokeysto_camltc.4.0.0 prep/universes/a73493e7f03ea29e895e6e0748eac2ac/minivpt/2.0.0,minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac,minivpt.2.0.0 prep/universes/2a0f9533e66d8618b57a3abf651b6681/lbvs_consent/2.0.0,lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681,lbvs_consent.2.0.0; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/f10a8e6d5c7eddcd8c8d8cfb436aa5d4/conf-openbabel/0.1,conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4,conf-openbabel.0.1 prep/universes/867faaa1b22ddf468733f4185040840e/cpm/12.0.0,cpm.12.0.0-867faaa1b22ddf468733f4185040840e,cpm.12.0.0 prep/universes/a25f644c5ca332f433ad4ca338c57ff8/dokeysto_camltc/4.0.0,dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8,dokeysto_camltc.4.0.0 prep/universes/a73493e7f03ea29e895e6e0748eac2ac/minivpt/2.0.0,minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac,minivpt.2.0.0 prep/universes/2a0f9533e66d8618b57a3abf651b6681/lbvs_consent/2.0.0,lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681,lbvs_consent.2.0.0; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) ) END-OF-SPEC ocluster-client submit-obuilder https://github.com/ocaml/opam-repository.git e776c77df1d0b111cb3b1444590283d23d94e527 --local-file prep.spec \ --pool linux-x86_64 --connect ocluster-submission.cap --cache-hint docs-universe-prep-4.11.2 \ --secret ssh_privkey:id_rsa --secret ssh_pubkey:id_rsa.pub--secret ssh_config:ssh_config 2024-09-12 19:27.52: RETRYING: 2024-09-12/083552-voodoo-prep-c32071 Number of retries: 0 (retriable error condition) Building on x86-bm-c2.sw.ocaml.org All commits already cached Updating files: 50% (16160/32043) Updating files: 51% (16342/32043) Updating files: 52% (16663/32043) Updating files: 53% (16983/32043) Updating files: 54% (17304/32043) Updating files: 55% (17624/32043) Updating files: 56% (17945/32043) Updating files: 57% (18265/32043) Updating files: 58% (18585/32043) Updating files: 59% (18906/32043) Updating files: 60% (19226/32043) Updating files: 61% (19547/32043) Updating files: 62% (19867/32043) Updating files: 63% (20188/32043) Updating files: 64% (20508/32043) Updating files: 65% (20828/32043) Updating files: 66% (21149/32043) Updating files: 67% (21469/32043) Updating files: 68% (21790/32043) Updating files: 69% (22110/32043) Updating files: 70% (22431/32043) Updating files: 71% (22751/32043) Updating files: 72% (23071/32043) Updating files: 73% (23392/32043) Updating files: 74% (23712/32043) Updating files: 75% (24033/32043) Updating files: 76% (24353/32043) Updating files: 77% (24674/32043) Updating files: 78% (24994/32043) Updating files: 79% (25314/32043) Updating files: 80% (25635/32043) Updating files: 81% (25955/32043) Updating files: 82% (26276/32043) Updating files: 83% (26596/32043) Updating files: 84% (26917/32043) Updating files: 85% (27237/32043) Updating files: 86% (27557/32043) Updating files: 87% (27878/32043) Updating files: 88% (28198/32043) Updating files: 89% (28519/32043) Updating files: 90% (28839/32043) Updating files: 91% (29160/32043) Updating files: 92% (29480/32043) Updating files: 93% (29800/32043) Updating files: 94% (30121/32043) Updating files: 95% (30441/32043) Updating files: 96% (30762/32043) Updating files: 97% (31082/32043) Updating files: 98% (31403/32043) Updating files: 99% (31723/32043) Updating files: 100% (32043/32043) Updating files: 100% (32043/32043), done. HEAD is now at e776c77df1 Add configuration for zlib under cygwin/mingw (build "tools" …) (from ocaml/opam:debian-12-ocaml-4.11@sha256:7a3d58c501028d55318e8ea9416b7c488fb2b901d00e3eae4ea94bf5181476e7) 2024-09-12 19:20.40 ---> using "7c9d80c6275be1f462cb36204c6232602c0fc1a02021eb94be1f064ed4e2f59d" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 19:20.40 ---> using "0093d7b4c20be4dd707452f439cd49ab24236fab760f7f266c01bc0ee6cd14a1" from cache /home/opam: (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 0s (821 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libpkgconf3 pkgconf pkgconf-bin Suggested packages: m4-doc The following NEW packages will be installed: libpkgconf3 m4 pkg-config pkgconf pkgconf-bin 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 392 kB of archives. After this operation, 969 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 392 kB in 0s (15.8 MB/s) Selecting previously unselected package libpkgconf3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18733 files and directories currently installed.) Preparing to unpack .../libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../pkgconf_1.8.1-1_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Setting up m4 (1.4.19-3) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 2024-09-12 19:20.40 ---> using "dfd4b37791106907970385fe62a1efa30f393e29bb49557aec08d4939964d28f" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 This will pin the following packages: voodoo-prep, voodoo-lib, voodoo-gen, voodoo-do. Continue? [Y/n] y Package voodoo-prep does not exist, create as a NEW package? [Y/n] y [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-prep is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-lib does not exist, create as a NEW package? [Y/n] y [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-lib is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-gen does not exist, create as a NEW package? [Y/n] y [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-gen is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-do does not exist, create as a NEW package? [Y/n] y [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-do is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # No extra OS packages requirements found. # All required OS packages found. # Now letting opam install the packages <><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><> [voodoo-prep.~dev] no changes from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 The following actions will be performed: - install ocamlbuild 0.15.0 [required by bos] - install dune 3.16.0 [required by voodoo-prep] - install ocamlfind 1.9.6 [required by bos] - install cmdliner 1.3.0 [required by voodoo-prep] - install seq base [required by re] - install swhid_core 0.1 [required by opam-core] - install stdlib-shims 0.3.0 [required by ocamlgraph, sha] - install opam-file-format 2.1.6 [required by opam-format] - install topkg 1.0.7 [required by bos] - install re 1.11.0 [required by opam-format] - install sha 1.15.4 [required by opam-core] - install ocamlgraph 2.1.0 [required by opam-core] - install uutf 1.0.3 [required by opam-core] - install rresult 0.7.0 [required by bos] - install fmt 0.9.0 [required by bos] - install astring 0.8.5 [required by bos] - install jsonm 1.0.2 [required by opam-core] - install logs 0.7.0 [required by bos] - install fpath 0.7.3 [required by voodoo-prep] - install opam-core 2.2.1 [required by opam-format] - install bos 0.2.1 [required by voodoo-prep] - install opam-format 2.2.1 [required by voodoo-prep] - install voodoo-prep ~dev* ===== 23 to install ===== <><> Gathering sources ><><><><><><><><><><><><><><><><><><><><><><><><><><><><> [astring.0.8.5] found in cache [bos.0.2.1] found in cache [cmdliner.1.3.0] found in cache [dune.3.16.0] found in cache [fmt.0.9.0] found in cache [fpath.0.7.3] found in cache [jsonm.1.0.2] found in cache [logs.0.7.0] found in cache [ocamlbuild.0.15.0] found in cache [ocamlfind.1.9.6] found in cache [ocamlgraph.2.1.0] found in cache [opam-core.2.2.1] found in cache [opam-file-format.2.1.6] found in cache [opam-format.2.2.1] found in cache [re.1.11.0] found in cache [rresult.0.7.0] found in cache [sha.1.15.4] found in cache [stdlib-shims.0.3.0] found in cache [swhid_core.0.1] found in cache [topkg.1.0.7] found in cache [uutf.1.0.3] found in cache [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> installed seq.base -> installed cmdliner.1.3.0 -> installed ocamlfind.1.9.6 -> installed ocamlbuild.0.15.0 -> installed topkg.1.0.7 -> installed rresult.0.7.0 -> installed uutf.1.0.3 -> installed fmt.0.9.0 -> installed astring.0.8.5 -> installed jsonm.1.0.2 -> installed fpath.0.7.3 -> installed logs.0.7.0 -> installed bos.0.2.1 -> installed dune.3.16.0 -> installed stdlib-shims.0.3.0 -> installed swhid_core.0.1 -> installed opam-file-format.2.1.6 -> installed re.1.11.0 -> installed sha.1.15.4 -> installed ocamlgraph.2.1.0 -> installed opam-core.2.2.1 -> installed opam-format.2.2.1 -> installed voodoo-prep.~dev Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 19:20.40 ---> using "d65d5ed31040ffe11d9e2a12be532dfa11793930e7d989b6ba3e87a4792f8a37" from cache /home/opam: (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")) 2024-09-12 19:20.40 ---> using "452314a0c194f85e51fffeb6293563780c98a1438fdc31741df4823e584ee9f9" from cache 2024-09-12 19:20.40 --> finished "tools" (from ocaml/opam:debian-12-ocaml-4.11@sha256:7a3d58c501028d55318e8ea9416b7c488fb2b901d00e3eae4ea94bf5181476e7) 2024-09-12 19:20.40 ---> using "7c9d80c6275be1f462cb36204c6232602c0fc1a02021eb94be1f064ed4e2f59d" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 19:20.40 ---> using "0093d7b4c20be4dd707452f439cd49ab24236fab760f7f266c01bc0ee6cd14a1" from cache /home/opam: (run (shell "sudo mkdir /src")) 2024-09-12 19:20.40 ---> using "2b0453ff944b8fee0761ccc2c65a37945587669066061243f0221d51360f5a60" from cache /home/opam: (copy (src packages) (dst /src/packages)) 2024-09-12 19:20.42 ---> using "f9f8128cf93e8ebf059f3e654f26319422eb8a5516331345543440f199821f6b" from cache /home/opam: (copy (src repo) (dst /src/repo)) 2024-09-12 19:20.42 ---> using "311ae0124850d99496a1094204393bd702abcc4a0788abdf1c800b1cc7222989" from cache /home/opam: (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) Configuring from /home/opam/.opamrc and then from built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted. You may want to back it up before going further. Continue? [Y/n] y Format upgrade done. <><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><> [default] synchronised from file:///home/opam/opam-repository 2024-09-12 19:20.42 ---> using "37c9ccb7ada65e8523ec60e9e6ec41cec7c092b7fd7691dad948a1c324c2223b" from cache /home/opam: (run (shell "opam repo remove default && opam repo add opam /src")) Repositories removed from the selections of switch 4.11. Use '--all' to forget about them altogether. [opam] Initialised [NOTE] Repository opam has been added to the selections of switch 4.11 only. Run `opam repository add opam --all-switches|--set-default' to use it in all existing switches, or in newly created switches, respectively. 2024-09-12 19:20.42 ---> using "b14f9abe78ad5a8336ba6fe927f216f914b91ca1e272d165d6afa04619e4f68c" from cache /home/opam: (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) 2024-09-12 19:20.42 ---> using "f7e8e0d3d5e5cdab9c92f794cc9de18e7e76349f7f296d3be3dbf18c52cbc60b" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.1.11.4 ocamlfind.1.9.6")) The following actions will be performed: - install dune 1.11.4 - install ocamlfind 1.9.6 ===== 2 to install ===== <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved ocamlfind.1.9.6 (cached) -> retrieved dune.1.11.4 (cached) -> installed ocamlfind.1.9.6 -> installed dune.1.11.4 Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 19:21.30 ---> saved as "0504876adfc0a1fdf7cfee2d16412dd013ed6b5e5f3f38c54fee33f226c973fe" /home/opam: (env DUNE_CACHE disabled) /home/opam: (env DUNE_CACHE_TRANSPORT direct) /home/opam: (env DUNE_CACHE_DUPLICATION copy) /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy lbvs_consent.2.0.0 topkg.1.0.7 stdlib-shims.0.3.0 seq.base result.1.5 qcheck-ounit.0.17 qcheck-core.0.17 qcheck.0.17 ppx_derivers.1.2.1 parmap.1.2.1 ounit2.2.2.6 ocplib-endian.1.2 ocamlfind.1.9.6 ocamlbuild.0.15.0 ocaml-migrate-parsetree.1.8.0 obuild.0.1.11 num.1.5-1 minivpt.2.0.0 lwt.5.7.0 logs.0.7.0 extunix.0.2.0 dune-configurator.1.0.0 dune.1.11.4 dolog.3.0 dokeysto_camltc.4.0.0 dokeysto.4.0.1 cppo.1.6.9 cpm.12.0.0 conf-zlib.1 conf-rdkit.1 conf-python-2-7.1.2 conf-pkg-config.3 conf-openbabel.0.1 conf-boost.1 conf-bash.1 conf-autoconf.0.2 camlzip.1.11 camltc.0.9.8 bitv.1.3 batteries.3.5.1 base-bytes.base 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 0s (956 kB/s) Reading package lists... Building dependency tree... Reading state information... All packages are up to date. Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y The following actions will be performed: - recompile opam-depext 1.2.3 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved opam-depext.1.2.3 (cached) -> removed opam-depext.1.2.3 -> installed opam-depext.1.2.3 Done. <><> opam-depext.1.2.3 installed successfully <><><><><><><><><><><><><><><><><> => opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead # Run eval $(opam env) to update the current shell environment <><> Carrying on to "opam depext -viy lbvs_consent.2.0.0 topkg.1.0.7 stdlib-shims.0.3.0 seq.base result.1.5 qcheck-ounit.0.17 qcheck-core.0.17 qcheck.0.17 ppx_derivers.1.2.1 parmap.1.2.1 ounit2.2.2.6 ocplib-endian.1.2 ocamlfind.1.9.6 ocamlbuild.0.15.0 ocaml-migrate-parsetree.1.8.0 obuild.0.1.11 num.1.5-1 minivpt.2.0.0 lwt.5.7.0 logs.0.7.0 extunix.0.2.0 dune-configurator.1.0.0 dune.1.11.4 dolog.3.0 dokeysto_camltc.4.0.0 dokeysto.4.0.1 cppo.1.6.9 cpm.12.0.0 conf-zlib.1 conf-rdkit.1 conf-python-2-7.1.2 conf-pkg-config.3 conf-openbabel.0.1 conf-boost.1 conf-bash.1 conf-autoconf.0.2 camlzip.1.11 camltc.0.9.8 bitv.1.3 batteries.3.5.1 base-bytes.base" Since version 2.1, opam now handles external dependencies alongside OCaml ones, and the `depext` plugin interface is provided for backwards compatibility only. Consider using your usual `opam install` command to install both OCaml and system dependencies, or `opam install <pkg> --depext-only` if you want to only install external dependencies. # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian [ERROR] No solution for lbvs_consent.2.0.0 & topkg.1.0.7 & stdlib-shims.0.3.0 & seq.base & result.1.5 & qcheck-ounit.0.17 & qcheck-core.0.17 & qcheck.0.17 & ppx_derivers.1.2.1 & parmap.1.2.1 & ounit2.2.2.6 & ocplib-endian.1.2 & ocamlfind.1.9.6 & ocamlbuild.0.15.0 & ocaml-migrate-parsetree.1.8.0 & obuild.0.1.11 & num.1.5-1 & minivpt.2.0.0 & lwt.5.7.0 & logs.0.7.0 & extunix.0.2.0 & dune-configurator.1.0.0 & dune.1.11.4 & dolog.3.0 & dokeysto_camltc.4.0.0 & dokeysto.4.0.1 & cppo.1.6.9 & cpm.12.0.0 & conf-zlib.1 & conf-rdkit.1 & conf-python-2-7.1.2 & conf-pkg-config.3 & conf-openbabel.0.1 & conf-boost.1 & conf-bash.1 & conf-autoconf.0.2 & camlzip.1.11 & camltc.0.9.8 & bitv.1.3 & batteries.3.5.1 & base-bytes.base: * Missing dependency: - conf-python-2-7 depends on the unavailable system package 'python2.7'. Use `--no-depexts' to attempt installation anyway, or it is possible that a depext package name in the opam file is incorrect. Command failed: opam --cli=2.1 list --readonly --external '--resolve=lbvs_consent.2.0.0,topkg.1.0.7,stdlib-shims.0.3.0,seq.base,result.1.5,qcheck-ounit.0.17,qcheck-core.0.17,qcheck.0.17,ppx_derivers.1.2.1,parmap.1.2.1,ounit2.2.2.6,ocplib-endian.1.2,ocamlfind.1.9.6,ocamlbuild.0.15.0,ocaml-migrate-parsetree.1.8.0,obuild.0.1.11,num.1.5-1,minivpt.2.0.0,lwt.5.7.0,logs.0.7.0,extunix.0.2.0,dune-configurator.1.0.0,dune.1.11.4,dolog.3.0,dokeysto_camltc.4.0.0,dokeysto.4.0.1,cppo.1.6.9,cpm.12.0.0,conf-zlib.1,conf-rdkit.1,conf-python-2-7.1.2,conf-pkg-config.3,conf-openbabel.0.1,conf-boost.1,conf-bash.1,conf-autoconf.0.2,camlzip.1.11,camltc.0.9.8,bitv.1.3,batteries.3.5.1,base-bytes.base' --color=never returned 20 2024-09-12 19:22.20 ---> saved as "675efdc8123f0f7823a3c5c2a4cb6bacf4540f40d5bff145bbccdcda4b4ad8a8" /home/opam: (run (shell "opam exec -- ~/voodoo-prep -u lbvs_consent:2a0f9533e66d8618b57a3abf651b6681,minivpt:a73493e7f03ea29e895e6e0748eac2ac,dokeysto_camltc:a25f644c5ca332f433ad4ca338c57ff8,cpm:867faaa1b22ddf468733f4185040840e,conf-openbabel:f10a8e6d5c7eddcd8c8d8cfb436aa5d4")) 2024-09-12 19:22.21 ---> saved as "70183dc0b73b3e2a9963a132e3e7b400c297ecb4b0a553bc2d8807d173ddb60d" /home/opam: (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.468149') && (for DATA in prep/universes/f10a8e6d5c7eddcd8c8d8cfb436aa5d4/conf-openbabel/0.1,conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4,conf-openbabel.0.1 prep/universes/867faaa1b22ddf468733f4185040840e/cpm/12.0.0,cpm.12.0.0-867faaa1b22ddf468733f4185040840e,cpm.12.0.0 prep/universes/a25f644c5ca332f433ad4ca338c57ff8/dokeysto_camltc/4.0.0,dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8,dokeysto_camltc.4.0.0 prep/universes/a73493e7f03ea29e895e6e0748eac2ac/minivpt/2.0.0,minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac,minivpt.2.0.0 prep/universes/2a0f9533e66d8618b57a3abf651b6681/lbvs_consent/2.0.0,lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681,lbvs_consent.2.0.0; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/f10a8e6d5c7eddcd8c8d8cfb436aa5d4/conf-openbabel/0.1,conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4,conf-openbabel.0.1 prep/universes/867faaa1b22ddf468733f4185040840e/cpm/12.0.0,cpm.12.0.0-867faaa1b22ddf468733f4185040840e,cpm.12.0.0 prep/universes/a25f644c5ca332f433ad4ca338c57ff8/dokeysto_camltc/4.0.0,dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8,dokeysto_camltc.4.0.0 prep/universes/a73493e7f03ea29e895e6e0748eac2ac/minivpt/2.0.0,minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac,minivpt.2.0.0 prep/universes/2a0f9533e66d8618b57a3abf651b6681/lbvs_consent/2.0.0,lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681,lbvs_consent.2.0.0; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/f10a8e6d5c7eddcd8c8d8cfb436aa5d4/conf-openbabel/0.1,conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4,conf-openbabel.0.1 prep/universes/867faaa1b22ddf468733f4185040840e/cpm/12.0.0,cpm.12.0.0-867faaa1b22ddf468733f4185040840e,cpm.12.0.0 prep/universes/a25f644c5ca332f433ad4ca338c57ff8/dokeysto_camltc/4.0.0,dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8,dokeysto_camltc.4.0.0 prep/universes/a73493e7f03ea29e895e6e0748eac2ac/minivpt/2.0.0,minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac,minivpt.2.0.0 prep/universes/2a0f9533e66d8618b57a3abf651b6681/lbvs_consent/2.0.0,lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681,lbvs_consent.2.0.0; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) 0.468149 FAILED:conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4 prep/universes/f10a8e6d5c7eddcd8c8d8cfb436aa5d4/conf-openbabel/0.1/opam prep/universes/f10a8e6d5c7eddcd8c8d8cfb436aa5d4/conf-openbabel/0.1/opam.err.log FAILED:cpm.12.0.0-867faaa1b22ddf468733f4185040840e prep/universes/867faaa1b22ddf468733f4185040840e/cpm/12.0.0/opam prep/universes/867faaa1b22ddf468733f4185040840e/cpm/12.0.0/opam.err.log FAILED:dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8 prep/universes/a25f644c5ca332f433ad4ca338c57ff8/dokeysto_camltc/4.0.0/opam prep/universes/a25f644c5ca332f433ad4ca338c57ff8/dokeysto_camltc/4.0.0/opam.err.log FAILED:minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac prep/universes/a73493e7f03ea29e895e6e0748eac2ac/minivpt/2.0.0/opam prep/universes/a73493e7f03ea29e895e6e0748eac2ac/minivpt/2.0.0/opam.err.log FAILED:lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681 prep/universes/2a0f9533e66d8618b57a3abf651b6681/lbvs_consent/2.0.0/opam prep/universes/2a0f9533e66d8618b57a3abf651b6681/lbvs_consent/2.0.0/opam.err.log Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. HASHES:conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4:f98268954355dd9024110eb3ca4e3a745c2bb8fa08a169f87cd8d4c27923de83 HASHES:cpm.12.0.0-867faaa1b22ddf468733f4185040840e:937d1da0c3553bb0031efc24b11b4c781c8c9728c1e5e3f08c8f0b5c32644632 HASHES:dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8:6beac3e097f3f99fd1c45822fd2059d84437abb74274d1917164940323b32da1 HASHES:minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac:c2b298ff7384f8295686905302f0982bb0b3fdb5b9a2b0501eaf786032d79eb9 HASHES:lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681:bf8197db07de27b8ea244d737ce64d3255dc1f4e2a37e5404c70ac3cc1c3340d 2024-09-12 19:22.32 ---> saved as "168413a1d98cecf31a7c604995335fe0e3aee8159ffcb1e1d9a58d383f599ddb" Job succeeded 2024-09-12 19:30.06: Failed: conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4 2024-09-12 19:30.06: Failed: cpm.12.0.0-867faaa1b22ddf468733f4185040840e 2024-09-12 19:30.06: Failed: dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8 2024-09-12 19:30.06: Failed: minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac 2024-09-12 19:30.06: Failed: lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681 2024-09-12 19:30.06: lbvs_consent.2.0.0-2a0f9533e66d8618b57a3abf651b6681 -> bf8197db07de27b8ea244d737ce64d3255dc1f4e2a37e5404c70ac3cc1c3340d 2024-09-12 19:30.06: minivpt.2.0.0-a73493e7f03ea29e895e6e0748eac2ac -> c2b298ff7384f8295686905302f0982bb0b3fdb5b9a2b0501eaf786032d79eb9 2024-09-12 19:30.06: dokeysto_camltc.4.0.0-a25f644c5ca332f433ad4ca338c57ff8 -> 6beac3e097f3f99fd1c45822fd2059d84437abb74274d1917164940323b32da1 2024-09-12 19:30.06: cpm.12.0.0-867faaa1b22ddf468733f4185040840e -> 937d1da0c3553bb0031efc24b11b4c781c8c9728c1e5e3f08c8f0b5c32644632 2024-09-12 19:30.06: conf-openbabel.0.1-f10a8e6d5c7eddcd8c8d8cfb436aa5d4 -> f98268954355dd9024110eb3ca4e3a745c2bb8fa08a169f87cd8d4c27923de83 2024-09-12 19:30.06: Job succeeded