Build:
- 0
2024-09-12 08:34.47: New job: Voodoo prep orsvm_e1071.4.0.0; 566d5fb4ff15bd4cc3a74d84e7df6855 2024-09-12 08:34.47: Connecting to build cluster… 2024-09-12 08:34.47: Waiting for resource in pool OCluster 2024-09-12 09:43.32: Waiting for worker… 2024-09-12 09:45.48: Got resource from pool OCluster 2024-09-12 09:45.48: Using cache hint "docs-universe-prep-5.1.1" To reproduce locally: cat > prep.spec <<'END-OF-SPEC' ((build tools ((from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")))) (from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (shell "sudo mkdir /src")) (copy (src packages) (dst /src/packages)) (copy (src repo) (dst /src/repo)) (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) (run (shell "opam repo remove default && opam repo add opam /src")) (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.16.0")) (env DUNE_CACHE enabled) (env DUNE_CACHE_TRANSPORT direct) (env DUNE_CACHE_DUPLICATION copy) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy orsvm_e1071.4.0.0 dune.3.16.0 dolog.6.0.0 conf-r.1.0.0 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) (run (shell "opam exec -- ~/voodoo-prep -u orsvm_e1071:566d5fb4ff15bd4cc3a74d84e7df6855,dolog:b7767ca17942f3f605b3e1001f4c9761")) (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.817882') && (for DATA in prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0,dolog.6.0.0-b7767ca17942f3f605b3e1001f4c9761,dolog.6.0.0 prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0,orsvm_e1071.4.0.0-566d5fb4ff15bd4cc3a74d84e7df6855,orsvm_e1071.4.0.0; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0,dolog.6.0.0-b7767ca17942f3f605b3e1001f4c9761,dolog.6.0.0 prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0,orsvm_e1071.4.0.0-566d5fb4ff15bd4cc3a74d84e7df6855,orsvm_e1071.4.0.0; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0,dolog.6.0.0-b7767ca17942f3f605b3e1001f4c9761,dolog.6.0.0 prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0,orsvm_e1071.4.0.0-566d5fb4ff15bd4cc3a74d84e7df6855,orsvm_e1071.4.0.0; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) ) END-OF-SPEC ocluster-client submit-obuilder https://github.com/ocaml/opam-repository.git a6069b9eebba0e2b70cdbbd834bc800eb6d671fb --local-file prep.spec \ --pool linux-x86_64 --connect ocluster-submission.cap --cache-hint docs-universe-prep-5.1.1 \ --secret ssh_privkey:id_rsa --secret ssh_pubkey:id_rsa.pub--secret ssh_config:ssh_config 2024-09-12 09:45.48: RETRYING: 2024-09-12/083447-voodoo-prep-41348e Number of retries: 0 (retriable error condition) Building on doris.caelum.ci.dev All commits already cached Updating files: 70% (22217/31655) Updating files: 71% (22476/31655) Updating files: 72% (22792/31655) Updating files: 73% (23109/31655) Updating files: 74% (23425/31655) Updating files: 75% (23742/31655) Updating files: 76% (24058/31655) Updating files: 77% (24375/31655) Updating files: 78% (24691/31655) Updating files: 79% (25008/31655) Updating files: 80% (25324/31655) Updating files: 81% (25641/31655) Updating files: 82% (25958/31655) Updating files: 83% (26274/31655) Updating files: 84% (26591/31655) Updating files: 85% (26907/31655) Updating files: 86% (27224/31655) Updating files: 87% (27540/31655) Updating files: 88% (27857/31655) Updating files: 89% (28173/31655) Updating files: 90% (28490/31655) Updating files: 91% (28807/31655) Updating files: 92% (29123/31655) Updating files: 93% (29440/31655) Updating files: 94% (29756/31655) Updating files: 95% (30073/31655) Updating files: 96% (30389/31655) Updating files: 97% (30706/31655) Updating files: 98% (31022/31655) Updating files: 99% (31339/31655) Updating files: 100% (31655/31655) Updating files: 100% (31655/31655), done. HEAD is now at a6069b9eeb [new release] dune (15 packages) (3.16.0) (build "tools" …) (from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) 2024-09-12 09:38.53 ---> using "4c7d809399bb207da0fd7e41f1744e0b774f33b83c9f971e29ee4e527ca6a31c" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 09:38.53 ---> using "dfe5e4646be142d6fc9d6a77140d209b028acc1d77475a5901c4ed3a5b4fb944" from cache /home/opam: (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 1s (406 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libpkgconf3 pkgconf pkgconf-bin Suggested packages: m4-doc The following NEW packages will be installed: libpkgconf3 m4 pkg-config pkgconf pkgconf-bin 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 392 kB of archives. After this operation, 969 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 392 kB in 0s (6833 kB/s) Selecting previously unselected package libpkgconf3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18764 files and directories currently installed.) Preparing to unpack .../libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../pkgconf_1.8.1-1_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Setting up m4 (1.4.19-3) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 2024-09-12 09:38.53 ---> using "00bd9b10ee4005c80d7af1faad8dfcb4e6ab122a52aeb43a33fdea8ec26bd562" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 This will pin the following packages: voodoo-prep, voodoo-lib, voodoo-gen, voodoo-do. Continue? [Y/n] y Package voodoo-prep does not exist, create as a NEW package? [Y/n] y [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-prep is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-lib does not exist, create as a NEW package? [Y/n] y [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-lib is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-gen does not exist, create as a NEW package? [Y/n] y [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-gen is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-do does not exist, create as a NEW package? [Y/n] y [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-do is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # No extra OS packages requirements found. # All required OS packages found. # Now letting opam install the packages <><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><> [voodoo-prep.~dev] no changes from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 The following actions will be performed: - install ocamlbuild 0.15.0 [required by bos] - install dune 3.16.0 [required by voodoo-prep] - install ocamlfind 1.9.6 [required by bos] - install cmdliner 1.3.0 [required by voodoo-prep] - install seq base [required by re] - install swhid_core 0.1 [required by opam-core] - install stdlib-shims 0.3.0 [required by ocamlgraph, sha] - install opam-file-format 2.1.6 [required by opam-format] - install topkg 1.0.7 [required by bos] - install re 1.12.0 [required by opam-format] - install sha 1.15.4 [required by opam-core] - install ocamlgraph 2.1.0 [required by opam-core] - install uutf 1.0.3 [required by opam-core] - install rresult 0.7.0 [required by bos] - install fmt 0.9.0 [required by bos] - install astring 0.8.5 [required by bos] - install jsonm 1.0.2 [required by opam-core] - install logs 0.7.0 [required by bos] - install fpath 0.7.3 [required by voodoo-prep] - install opam-core 2.2.1 [required by opam-format] - install bos 0.2.1 [required by voodoo-prep] - install opam-format 2.2.1 [required by voodoo-prep] - install voodoo-prep ~dev* ===== 23 to install ===== <><> Gathering sources ><><><><><><><><><><><><><><><><><><><><><><><><><><><><> [astring.0.8.5] found in cache [bos.0.2.1] found in cache [cmdliner.1.3.0] found in cache [dune.3.16.0] found in cache [fmt.0.9.0] found in cache [fpath.0.7.3] found in cache [jsonm.1.0.2] found in cache [logs.0.7.0] found in cache [ocamlbuild.0.15.0] found in cache [ocamlfind.1.9.6] found in cache [ocamlgraph.2.1.0] found in cache [opam-core.2.2.1] found in cache [opam-file-format.2.1.6] found in cache [opam-format.2.2.1] found in cache [re.1.12.0] found in cache [rresult.0.7.0] found in cache [sha.1.15.4] found in cache [stdlib-shims.0.3.0] found in cache [swhid_core.0.1] found in cache [topkg.1.0.7] found in cache [uutf.1.0.3] found in cache [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> installed seq.base -> installed cmdliner.1.3.0 -> installed ocamlfind.1.9.6 -> installed ocamlbuild.0.15.0 -> installed topkg.1.0.7 -> installed rresult.0.7.0 -> installed uutf.1.0.3 -> installed fmt.0.9.0 -> installed astring.0.8.5 -> installed jsonm.1.0.2 -> installed fpath.0.7.3 -> installed logs.0.7.0 -> installed dune.3.16.0 -> installed stdlib-shims.0.3.0 -> installed swhid_core.0.1 -> installed bos.0.2.1 -> installed opam-file-format.2.1.6 -> installed re.1.12.0 -> installed sha.1.15.4 -> installed ocamlgraph.2.1.0 -> installed opam-core.2.2.1 -> installed opam-format.2.2.1 -> installed voodoo-prep.~dev Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 09:38.53 ---> using "c0ffca0379d767eba96c496d9c3d5a7963b49f0084e5d4e2addf8acd8b75d3e3" from cache /home/opam: (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")) 2024-09-12 09:38.53 ---> using "b3e1bb4015a777b85e55a6a5ba3e4cb907c2d4ba79725c400a82b494d511dc59" from cache 2024-09-12 09:38.53 --> finished "tools" (from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) 2024-09-12 09:38.53 ---> using "4c7d809399bb207da0fd7e41f1744e0b774f33b83c9f971e29ee4e527ca6a31c" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 09:38.53 ---> using "dfe5e4646be142d6fc9d6a77140d209b028acc1d77475a5901c4ed3a5b4fb944" from cache /home/opam: (run (shell "sudo mkdir /src")) 2024-09-12 09:38.53 ---> using "2b0e5c6a092f9ca1bbda95f5b7a2ea41fa9d1fb5a59427c4d5a1765abb041698" from cache /home/opam: (copy (src packages) (dst /src/packages)) 2024-09-12 09:38.55 ---> using "d4f0d4030791300ef4042828362ff280b1e81860e6a8125fec1dab9219567e83" from cache /home/opam: (copy (src repo) (dst /src/repo)) 2024-09-12 09:38.55 ---> using "22c0ccab6817fea04b05a5ff9b68a97eba08ea79937a256879ab4594b9281772" from cache /home/opam: (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) Configuring from /home/opam/.opamrc and then from built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted. You may want to back it up before going further. Continue? [Y/n] y Format upgrade done. <><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><> [default] synchronised from file:///home/opam/opam-repository 2024-09-12 09:38.55 ---> using "46f549f45de51f3cc7ef2bc34845a9c8804783566be8c032bf232bcd1bc3701d" from cache /home/opam: (run (shell "opam repo remove default && opam repo add opam /src")) Repositories removed from the selections of switch 5.1. Use '--all' to forget about them altogether. [opam] Initialised [NOTE] Repository opam has been added to the selections of switch 5.1 only. Run `opam repository add opam --all-switches|--set-default' to use it in all existing switches, or in newly created switches, respectively. 2024-09-12 09:38.55 ---> using "3d32a237cd7461f955881b85a4d878b434509c0f6117eff32fa5d41dabbbf308" from cache /home/opam: (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) 2024-09-12 09:38.55 ---> using "bd758d4821c5cad610203ce2f22d19f5293732b05c2b25765483f591e35e5803" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.16.0")) The following actions will be performed: - install dune 3.16.0 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved dune.3.16.0 (cached) -> installed dune.3.16.0 Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 09:38.55 ---> using "4eda140d79f92ac31f832188fac7f141ffabc332e25bf3b7abd6fdb8a2bfb4c8" from cache /home/opam: (env DUNE_CACHE enabled) /home/opam: (env DUNE_CACHE_TRANSPORT direct) /home/opam: (env DUNE_CACHE_DUPLICATION copy) /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy orsvm_e1071.4.0.0 dune.3.16.0 dolog.6.0.0 conf-r.1.0.0 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 0s (883 kB/s) Reading package lists... Building dependency tree... Reading state information... All packages are up to date. Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y The following actions will be performed: - recompile opam-depext 1.2.3 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved opam-depext.1.2.3 (cached) -> removed opam-depext.1.2.3 -> installed opam-depext.1.2.3 Done. <><> opam-depext.1.2.3 installed successfully <><><><><><><><><><><><><><><><><> => opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead # Run eval $(opam env) to update the current shell environment <><> Carrying on to "opam depext -viy orsvm_e1071.4.0.0 dune.3.16.0 dolog.6.0.0 conf-r.1.0.0" Since version 2.1, opam now handles external dependencies alongside OCaml ones, and the `depext` plugin interface is provided for backwards compatibility only. Consider using your usual `opam install` command to install both OCaml and system dependencies, or `opam install <pkg> --depext-only` if you want to only install external dependencies. # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # The following system packages are needed: r-base-core [NOTE] Package dune is already installed (current version is 3.16.0). The following actions will be performed: - install conf-r 1.0.0 - install dolog 6.0.0 - install orsvm_e1071 4.0.0 ===== 3 to install ===== The following system packages will first need to be installed: r-base-core <><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><> Let opam run your package manager to install the required system packages? (answer 'n' for other options) [Y/n] y + /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "r-base-core" - debconf: delaying package configuration, since apt-utils is not installed - Selecting previously unselected package libdbus-1-3:amd64. - (Reading database ... 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unselected package libxcb-dri3-0:amd64. - Preparing to unpack .../042-libxcb-dri3-0_1.15-1_amd64.deb ... - Unpacking libxcb-dri3-0:amd64 (1.15-1) ... - Selecting previously unselected package libxcb-present0:amd64. - Preparing to unpack .../043-libxcb-present0_1.15-1_amd64.deb ... - Unpacking libxcb-present0:amd64 (1.15-1) ... - Selecting previously unselected package libxcb-randr0:amd64. - Preparing to unpack .../044-libxcb-randr0_1.15-1_amd64.deb ... - Unpacking libxcb-randr0:amd64 (1.15-1) ... - Selecting previously unselected package libxcb-sync1:amd64. - Preparing to unpack .../045-libxcb-sync1_1.15-1_amd64.deb ... - Unpacking libxcb-sync1:amd64 (1.15-1) ... - Selecting previously unselected package libxcb-xfixes0:amd64. - Preparing to unpack .../046-libxcb-xfixes0_1.15-1_amd64.deb ... - Unpacking libxcb-xfixes0:amd64 (1.15-1) ... - Selecting previously unselected package libxshmfence1:amd64. - Preparing to unpack .../047-libxshmfence1_1.3-1_amd64.deb ... - Unpacking libxshmfence1:amd64 (1.3-1) ... - Selecting previously unselected package libegl-mesa0:amd64. - Preparing to unpack .../048-libegl-mesa0_22.3.6-1+deb12u1_amd64.deb ... - Unpacking libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... - Selecting previously unselected package libelf1:amd64. - Preparing to unpack .../049-libelf1_0.188-2.1_amd64.deb ... - Unpacking libelf1:amd64 (0.188-2.1) ... - Selecting previously unselected package libencode-locale-perl. - Preparing to unpack .../050-libencode-locale-perl_1.05-3_all.deb ... - Unpacking libencode-locale-perl (1.05-3) ... - Selecting previously unselected package libipc-system-simple-perl. - Preparing to unpack .../051-libipc-system-simple-perl_1.30-2_all.deb ... - Unpacking libipc-system-simple-perl (1.30-2) ... - Selecting previously unselected package libfile-basedir-perl. - Preparing to unpack .../052-libfile-basedir-perl_0.09-2_all.deb ... - Unpacking libfile-basedir-perl (0.09-2) ... - Selecting previously unselected package libregexp-ipv6-perl. - Preparing to unpack .../053-libregexp-ipv6-perl_0.03-3_all.deb ... - Unpacking libregexp-ipv6-perl (0.03-3) ... - Selecting previously unselected package liburi-perl. - Preparing to unpack .../054-liburi-perl_5.17-1_all.deb ... - Unpacking liburi-perl (5.17-1) ... - Selecting previously unselected package libfile-desktopentry-perl. - Preparing to unpack .../055-libfile-desktopentry-perl_0.22-3_all.deb ... - Unpacking libfile-desktopentry-perl (0.22-3) ... - Selecting previously unselected package libtimedate-perl. - Preparing to unpack .../056-libtimedate-perl_2.3300-2_all.deb ... - Unpacking libtimedate-perl (2.3300-2) ... - Selecting previously unselected package libhttp-date-perl. - Preparing to unpack .../057-libhttp-date-perl_6.05-2_all.deb ... - Unpacking libhttp-date-perl (6.05-2) ... - Selecting previously unselected package libfile-listing-perl. - Preparing to unpack .../058-libfile-listing-perl_6.15-1_all.deb ... - Unpacking libfile-listing-perl (6.15-1) ... - Selecting previously unselected package libglib2.0-0:amd64. - Preparing to unpack .../059-libglib2.0-0_2.74.6-2+deb12u3_amd64.deb ... - Unpacking libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... - Selecting previously unselected package libxml2:amd64. - Preparing to unpack .../060-libxml2_2.9.14+dfsg-1.3~deb12u1_amd64.deb ... - Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... - Selecting previously unselected package shared-mime-info. - Preparing to unpack .../061-shared-mime-info_2.2-1_amd64.deb ... - Unpacking shared-mime-info (2.2-1) ... - Selecting previously unselected package libfile-mimeinfo-perl. - Preparing to unpack .../062-libfile-mimeinfo-perl_0.33-1_all.deb ... - Unpacking libfile-mimeinfo-perl (0.33-1) ... - Selecting previously unselected package libfont-afm-perl. - Preparing to unpack .../063-libfont-afm-perl_1.20-4_all.deb ... - Unpacking libfont-afm-perl (1.20-4) ... - Selecting previously unselected package libfontenc1:amd64. - Preparing to unpack .../064-libfontenc1_1%3a1.1.4-1_amd64.deb ... - Unpacking libfontenc1:amd64 (1:1.1.4-1) ... - Selecting previously unselected package libfribidi0:amd64. - Preparing to unpack .../065-libfribidi0_1.0.8-2.1_amd64.deb ... - Unpacking libfribidi0:amd64 (1.0.8-2.1) ... - Selecting previously unselected package libglvnd0:amd64. - Preparing to unpack .../066-libglvnd0_1.6.0-1_amd64.deb ... - Unpacking libglvnd0:amd64 (1.6.0-1) ... - Selecting previously unselected package libxcb-glx0:amd64. - Preparing to unpack .../067-libxcb-glx0_1.15-1_amd64.deb ... - Unpacking libxcb-glx0:amd64 (1.15-1) ... - Selecting previously unselected package libxfixes3:amd64. - Preparing to unpack .../068-libxfixes3_1%3a6.0.0-2_amd64.deb ... - Unpacking libxfixes3:amd64 (1:6.0.0-2) ... - Selecting previously unselected package libxxf86vm1:amd64. - Preparing to unpack .../069-libxxf86vm1_1%3a1.1.4-1+b2_amd64.deb ... - Unpacking libxxf86vm1:amd64 (1:1.1.4-1+b2) ... - Selecting previously unselected package libz3-4:amd64. - Preparing to unpack .../070-libz3-4_4.8.12-3.1_amd64.deb ... - Unpacking libz3-4:amd64 (4.8.12-3.1) ... - Selecting previously unselected package libllvm15:amd64. - Preparing to unpack .../071-libllvm15_1%3a15.0.6-4+b1_amd64.deb ... - Unpacking libllvm15:amd64 (1:15.0.6-4+b1) ... - Selecting previously unselected package libsensors-config. - Preparing to unpack .../072-libsensors-config_1%3a3.6.0-7.1_all.deb ... - Unpacking libsensors-config (1:3.6.0-7.1) ... - Selecting previously unselected package libsensors5:amd64. - Preparing to unpack .../073-libsensors5_1%3a3.6.0-7.1_amd64.deb ... - Unpacking libsensors5:amd64 (1:3.6.0-7.1) ... - Selecting previously unselected package libgl1-mesa-dri:amd64. - Preparing to unpack .../074-libgl1-mesa-dri_22.3.6-1+deb12u1_amd64.deb ... - Unpacking libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... - Selecting previously unselected package libglx-mesa0:amd64. - Preparing to unpack .../075-libglx-mesa0_22.3.6-1+deb12u1_amd64.deb ... - Unpacking libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... - Selecting previously unselected package libglx0:amd64. - Preparing to unpack .../076-libglx0_1.6.0-1_amd64.deb ... - Unpacking libglx0:amd64 (1.6.0-1) ... - Selecting previously unselected package libgl1:amd64. - Preparing to unpack .../077-libgl1_1.6.0-1_amd64.deb ... - Unpacking libgl1:amd64 (1.6.0-1) ... - Selecting previously unselected package libgles2:amd64. - Preparing to unpack .../078-libgles2_1.6.0-1_amd64.deb ... - Unpacking libgles2:amd64 (1.6.0-1) ... - Selecting previously unselected package libglib2.0-data. - Preparing to unpack .../079-libglib2.0-data_2.74.6-2+deb12u3_all.deb ... - Unpacking libglib2.0-data (2.74.6-2+deb12u3) ... - Selecting previously unselected package libgraphite2-3:amd64. - Preparing to unpack .../080-libgraphite2-3_1.3.14-1_amd64.deb ... - Unpacking libgraphite2-3:amd64 (1.3.14-1) ... - Selecting previously unselected package libharfbuzz0b:amd64. - Preparing to unpack .../081-libharfbuzz0b_6.0.0+dfsg-3_amd64.deb ... - Unpacking libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... - Selecting previously unselected package libhtml-tagset-perl. - Preparing to unpack .../082-libhtml-tagset-perl_3.20-6_all.deb ... - Unpacking libhtml-tagset-perl (3.20-6) ... - Selecting previously unselected package libhtml-parser-perl:amd64. - Preparing to unpack .../083-libhtml-parser-perl_3.81-1_amd64.deb ... - Unpacking libhtml-parser-perl:amd64 (3.81-1) ... - Selecting previously unselected package libio-html-perl. - Preparing to unpack .../084-libio-html-perl_1.004-3_all.deb ... - Unpacking libio-html-perl (1.004-3) ... - Selecting previously unselected package liblwp-mediatypes-perl. - Preparing to unpack .../085-liblwp-mediatypes-perl_6.04-2_all.deb ... - Unpacking liblwp-mediatypes-perl (6.04-2) ... - Selecting previously unselected package libhttp-message-perl. - Preparing to unpack .../086-libhttp-message-perl_6.44-1_all.deb ... - Unpacking libhttp-message-perl (6.44-1) ... 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... - Setting up libpixman-1-0:amd64 (0.42.2-1) ... - Setting up bzip2-doc (1.0.8-5) ... - Setting up libwayland-server0:amd64 (1.21.0-1) ... - Setting up libx11-xcb1:amd64 (2:1.8.4-2+deb12u2) ... - Setting up libpciaccess0:amd64 (0.17-2) ... - Setting up fontconfig (2.14.1-4) ... - Regenerating fonts cache... - done. - Setting up libapparmor1:amd64 (3.0.8-3) ... - Setting up libtie-ixhash-perl (1.23-4) ... - Setting up libicu72:amd64 (72.1-3) ... - Setting up libxcb-xfixes0:amd64 (1.15-1) ... - Setting up r-doc-html (4.2.2.20221110-2) ... - Setting up libpcre16-3:amd64 (2:8.39-15) ... - Setting up libxi6:amd64 (2:1.8-1+b1) ... - Setting up libfont-afm-perl (1.20-4) ... - Setting up libxrender1:amd64 (1:0.9.10-1.1) ... - Setting up libdatrie1:amd64 (0.2.13-2+b1) ... - Setting up xdg-user-dirs (0.18-1) ... - Setting up libpng-tools (1.6.39-2) ... - Setting up libxcb-render0:amd64 (1.15-1) ... - Setting up libclone-perl:amd64 (0.46-1) ... - Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... - No schema files found: doing nothing. - Setting up libglvnd0:amd64 (1.6.0-1) ... - Setting up libio-stringy-perl (2.111-3) ... - Setting up libhtml-tagset-perl (3.20-6) ... - Setting up libauthen-sasl-perl (2.1600-3) ... - Setting up libxcb-glx0:amd64 (1.15-1) ... - Setting up liblwp-mediatypes-perl (6.04-2) ... - Setting up libxcb-shape0:amd64 (1.15-1) ... - Setting up x11-common (1:7.7+23) ... - invoke-rc.d: could not determine current runlevel - invoke-rc.d: policy-rc.d denied execution of restart. - Setting up libtry-tiny-perl (0.31-2) ... - Setting up libsensors-config (1:3.6.0-7.1) ... - Setting up libxxf86dga1:amd64 (2:1.1.5-1) ... - Setting up perl-openssl-defaults:amd64 (7+b1) ... - Setting up libencode-locale-perl (1.05-3) ... - Setting up libxcb-shm0:amd64 (1.15-1) ... - Setting up libcairo2:amd64 (1.16.0-7) ... - Setting up libpcre2-16-0:amd64 (10.42-1) ... - Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... - Setting up libxcb-present0:amd64 (1.15-1) ... - Setting up libpcre3:amd64 (2:8.39-15) ... - Setting up zip (3.0-13) ... - Setting up libfontenc1:amd64 (1:1.1.4-1) ... - Setting up libz3-4:amd64 (4.8.12-3.1) ... - Setting up libpcre2-32-0:amd64 (10.42-1) ... - Setting up libblas3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode - Setting up libglib2.0-data (2.74.6-2+deb12u3) ... - Setting up libpkgconf3:amd64 (1.8.1-1) ... - Setting up libgles2:amd64 (1.6.0-1) ... - Setting up libdata-dump-perl (1.25-1) ... - Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-2) ... - Setting up libxfixes3:amd64 (1:6.0.0-2) ... - Setting up libxcb-sync1:amd64 (1.15-1) ... - Setting up libipc-system-simple-perl (1.30-2) ... - Setting up libxml-xpathengine-perl (0.14-2) ... - Setting up libncurses6:amd64 (6.4-4) ... - Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... - Setting up libfribidi0:amd64 (1.0.8-2.1) ... - Setting up libxinerama1:amd64 (2:1.1.4-3) ... - Setting up libxv1:amd64 (2:1.0.11-1.1) ... - Setting up libpcre32-3:amd64 (2:8.39-15) ... - Setting up libio-html-perl (1.004-3) ... - Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... - Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... - Setting up icu-devtools (72.1-3) ... - Setting up pkgconf-bin (1.8.1-1) ... - Setting up libsensors5:amd64 (1:3.6.0-7.1) ... - Setting up libglapi-mesa:amd64 (22.3.6-1+deb12u1) ... - Setting up libgfortran5:amd64 (12.2.0-14) ... - Setting up libtimedate-perl (2.3300-2) ... - Setting up libregexp-ipv6-perl (0.03-3) ... - Setting up liblzma-dev:amd64 (5.4.1-0.2) ... - Setting up libxcb-dri2-0:amd64 (1.15-1) ... - Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... - Setting up libpcre2-posix3:amd64 (10.42-1) ... - Setting up sensible-utils (0.0.17+nmu1) ... - Setting up libxshmfence1:amd64 (1.3-1) ... - Setting up libxcb-randr0:amd64 (1.15-1) ... - Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ... - Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... - Setting up libthai-data (0.1.29-1) ... - Setting up libxss1:amd64 (1:1.2.3-1) ... - Setting up libxkbfile1:amd64 (1:1.1.0-1) ... - Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... - Setting up libdrm-common (2.4.114-1) ... - Setting up libelf1:amd64 (0.188-2.1) ... - Setting up libxcomposite1:amd64 (1:0.4.5-1) ... - Setting up libicu-dev:amd64 (72.1-3) ... - Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... - Setting up xdg-utils (1.1.3-4.1) ... - update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode - Setting up liburi-perl (5.17-1) ... - Setting up dbus-bin (1.14.10-1~deb12u1) ... - Setting up libx11-protocol-perl (0.56-9) ... - Setting up libblas-dev:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode - Setting up libbz2-dev:amd64 (1.0.8-5+b1) ... - Setting up libwayland-client0:amd64 (1.21.0-1) ... - Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... - Setting up libpcrecpp0v5:amd64 (2:8.39-15) ... - Setting up libice6:amd64 (2:1.0.10-1) ... - Setting up libhttp-date-perl (6.05-2) ... - Setting up liblapack3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode - Setting up libxft2:amd64 (2.3.6-1) ... - Setting up libncurses-dev:amd64 (6.4-4) ... - Setting up libfile-basedir-perl (0.09-2) ... - Setting up libfile-listing-perl (6.15-1) ... - Setting up libpcre2-dev:amd64 (10.42-1) ... - Setting up libpcre3-dev:amd64 (2:8.39-15) ... - Setting up libxtst6:amd64 (2:1.2.3-1.1) ... - Setting up libtk8.6:amd64 (8.6.13-2) ... - Setting up libxcursor1:amd64 (1:1.2.1-1) ... - Setting up libpng-dev:amd64 (1.6.39-2) ... - Setting up libjpeg-dev:amd64 (1:2.1.5-2) ... - Setting up libnet-http-perl (6.22-1) ... - Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... - Setting up dbus-daemon (1.14.10-1~deb12u1) ... - Setting up libreadline-dev:amd64 (8.2-1.3) ... - Setting up pkgconf:amd64 (1.8.1-1) ... - Setting up libthai0:amd64 (0.1.29-1) ... - Setting up gfortran-12 (12.2.0-14) ... - Setting up dbus (1.14.10-1~deb12u1) ... - invoke-rc.d: could not determine current runlevel - invoke-rc.d: policy-rc.d denied execution of start. - Setting up shared-mime-info (2.2-1) ... - Setting up liblapack-dev:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode - Setting up pkg-config:amd64 (1.8.1-1) ... - Setting up ucf (3.0043+nmu1) ... - Setting up libfile-desktopentry-perl (0.22-3) ... - Setting up libwww-robotrules-perl (6.02-1) ... - Setting up libdrm2:amd64 (2.4.114-1+b1) ... - Setting up libhtml-parser-perl:amd64 (3.81-1) ... - Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... - Setting up libncurses5-dev:amd64 (6.4-4) ... - Setting up libsm6:amd64 (2:1.2.3-1) ... - Setting up libio-socket-ssl-perl (2.081-2) ... - Setting up libhttp-message-perl (6.44-1) ... - Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... - Setting up libhtml-form-perl (6.11-1) ... - Setting up libfile-mimeinfo-perl (0.33-1) ... - Setting up libpaper1:amd64 (1.1.29) ... - - Creating config file /etc/papersize with new version - Setting up libhttp-negotiate-perl (6.01-2) ... - Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... - Setting up libgbm1:amd64 (22.3.6-1+deb12u1) ... - Setting up libhttp-cookies-perl (6.10-1) ... - Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... - Setting up libhtml-tree-perl (5.07-3) ... - Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... - Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... - Setting up libhtml-format-perl (2.16-2) ... - Setting up libpaper-utils (1.1.29) ... - Setting up gfortran (4:12.2.0-3) ... - update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode - update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode - Setting up libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up libnet-smtp-ssl-perl (1.04-2) ... - Setting up libmailtools-perl (2.21-2) ... - Setting up libxt6:amd64 (1:1.2.1-1.1) ... - Setting up libhttp-daemon-perl (6.16-1) ... - Setting up libegl1:amd64 (1.6.0-1) ... - Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libxmu6:amd64 (2:1.1.3-3) ... - Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up libglx0:amd64 (1.6.0-1) ... - Setting up libxaw7:amd64 (2:1.0.14-1) ... - Setting up x11-xserver-utils (7.7+9+b1) ... - Setting up libgl1:amd64 (1.6.0-1) ... - Setting up r-base-core (4.2.2.20221110-2) ... - - Creating config file /etc/R/Renviron with new version - Setting up r-cran-lattice (0.20-45-3) ... - Setting up r-cran-nlme (3.1.162-1) ... - Setting up zutty (0.14.0.20230218+dfsg1-1) ... - update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode - Setting up r-cran-cluster (2.1.4-1) ... - Setting up x11-utils (7.7+5) ... - Setting up r-cran-nnet (7.3-18-1) ... - Setting up r-cran-codetools (0.2-19-1) ... - Setting up r-cran-boot (1.3-28.1-1) ... - Setting up r-base-dev (4.2.2.20221110-2) ... - Setting up r-cran-spatial (7.3-16-1) ... - Setting up r-cran-mass (7.3-58.2-1) ... - Setting up r-cran-foreign (0.8.84-1) ... - Setting up r-cran-matrix (1.5-3-1) ... - Setting up r-cran-kernsmooth (2.23-20-1) ... - Setting up r-cran-mgcv (1.8-41-1) ... - Setting up r-cran-class (7.3-21-1) ... - Setting up r-cran-survival (3.5-3-1) ... - Setting up r-cran-rpart (4.1.19-1) ... - Setting up r-recommended (4.2.2.20221110-2) ... - Setting up liblwp-protocol-https-perl (6.10-1) ... - Setting up libwww-perl (6.68-1) ... - Setting up libxml-parser-perl (2.46-4) ... - Setting up libxml-twig-perl (1:3.52-2) ... - Setting up libnet-dbus-perl (1.2.0-2) ... - Processing triggers for libc-bin (2.36-9+deb12u8) ... <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved conf-r.1.0.0 (cached) Processing 2/9: Processing 3/9: [orsvm_e1071.4.0.0: http] Processing 4/9: [orsvm_e1071.4.0.0: http] [conf-r: R CMD] -> retrieved dolog.6.0.0 (cached) Processing 5/9: [orsvm_e1071.4.0.0: http] [conf-r: R CMD] [dolog: dune build] Processing 5/9: [conf-r: R CMD] [dolog: dune build] -> retrieved orsvm_e1071.4.0.0 (https://github.com/UnixJunkie/orsvm-e1071/archive/v4.0.0.tar.gz) -> compiled conf-r.1.0.0 Processing 5/9: [dolog: dune build] -> installed conf-r.1.0.0 Processing 6/9: [dolog: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "dolog" "-j" "39" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dolog.6.0.0) -> compiled dolog.6.0.0 -> installed dolog.6.0.0 Processing 8/9: [orsvm_e1071: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "orsvm_e1071" "-j" "39" (CWD=/home/opam/.opam/5.1/.opam-switch/build/orsvm_e1071.4.0.0) -> compiled orsvm_e1071.4.0.0 -> installed orsvm_e1071.4.0.0 Done. <><> orsvm_e1071.4.0.0 installed successfully <><><><><><><><><><><><><><><><><> => Please interact with R to install needed things in user-space: R install.packages('e1071', repos='http://cran.r-project.org') install.packages('svmpath', repos='http://cran.r-project.org') # Run eval $(opam env) to update the current shell environment 2024-09-12 09:40.30 ---> saved as "abde2433e6dcc12fbc99af37e0a91e44cf77f257208df9ce3c59c36a49ab843a" /home/opam: (run (shell "opam exec -- ~/voodoo-prep -u orsvm_e1071:566d5fb4ff15bd4cc3a74d84e7df6855,dolog:b7767ca17942f3f605b3e1001f4c9761")) 2024-09-12 09:40.32 ---> saved as "4b609dcc1995a940478bd30240e9a6c05d1d634aa9a4145cf8c25dabbc05bff9" /home/opam: (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.817882') && (for DATA in prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0,dolog.6.0.0-b7767ca17942f3f605b3e1001f4c9761,dolog.6.0.0 prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0,orsvm_e1071.4.0.0-566d5fb4ff15bd4cc3a74d84e7df6855,orsvm_e1071.4.0.0; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0,dolog.6.0.0-b7767ca17942f3f605b3e1001f4c9761,dolog.6.0.0 prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0,orsvm_e1071.4.0.0-566d5fb4ff15bd4cc3a74d84e7df6855,orsvm_e1071.4.0.0; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0,dolog.6.0.0-b7767ca17942f3f605b3e1001f4c9761,dolog.6.0.0 prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0,orsvm_e1071.4.0.0-566d5fb4ff15bd4cc3a74d84e7df6855,orsvm_e1071.4.0.0; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) 0.817882 prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/doc/ prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/doc/dolog/ prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/doc/dolog/CHANGES prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/doc/dolog/README.md prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/ prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/dolog/ prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/dolog/dolog.ocamlobjinfo prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/dolog/META prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/dolog/dolog.cmi prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/dolog/dolog.cmt prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/dolog/dolog__Log.cmi prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/dolog/dolog__Log.cmt prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/dolog/dolog__Log.cmti prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/lib/dolog/dune-package prep/universes/b7767ca17942f3f605b3e1001f4c9761/dolog/6.0.0/opam prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/doc/ prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/doc/orsvm_e1071/ prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/doc/orsvm_e1071/LICENSE prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/doc/orsvm_e1071/README.md prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/ prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/ prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071.ocamlobjinfo prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/META prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/dune-package prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071.cmi prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071.cmt prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Result.cmi prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Result.cmt prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Svm.cmi prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Svm.cmt prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Svm.cmti prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Svmpath.cmi prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Svmpath.cmt prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Svmpath.cmti prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Utls.cmi prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/lib/orsvm_e1071/orsvm_e1071__Utls.cmt prep/universes/566d5fb4ff15bd4cc3a74d84e7df6855/orsvm_e1071/4.0.0/opam Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. HASHES:dolog.6.0.0-b7767ca17942f3f605b3e1001f4c9761:07104c10cb7d35e96ffd29afa2d5c075e9c104912bc9009e7d8ef14e67209134 HASHES:orsvm_e1071.4.0.0-566d5fb4ff15bd4cc3a74d84e7df6855:5ad22ee628ea53c42bd8ba90f0ffd94c6ca5383cc791cd5021b681e560dfb49c 2024-09-12 09:40.33 ---> saved as "ac39d802e309e4b6ad2a5a368c5168f39683d580c2fcc56e96ead6d4b5446927" Job succeeded 2024-09-12 09:50.09: orsvm_e1071.4.0.0-566d5fb4ff15bd4cc3a74d84e7df6855 -> 5ad22ee628ea53c42bd8ba90f0ffd94c6ca5383cc791cd5021b681e560dfb49c 2024-09-12 09:50.09: dolog.6.0.0-b7767ca17942f3f605b3e1001f4c9761 -> 07104c10cb7d35e96ffd29afa2d5c075e9c104912bc9009e7d8ef14e67209134 2024-09-12 09:50.09: Job succeeded