Build:
- 0
2024-09-12 08:34.45: New job: Voodoo prep oplsr.5.0.1; 5bbc5ef120570110292fe41f58e1e4e9 2024-09-12 08:34.45: Connecting to build cluster… 2024-09-12 08:34.45: Waiting for resource in pool OCluster 2024-09-12 11:17.42: Waiting for worker… 2024-09-12 11:20.16: Got resource from pool OCluster 2024-09-12 11:20.16: Using cache hint "docs-universe-prep-5.1.1" To reproduce locally: cat > prep.spec <<'END-OF-SPEC' ((build tools ((from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")))) (from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (shell "sudo mkdir /src")) (copy (src packages) (dst /src/packages)) (copy (src repo) (dst /src/repo)) (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) (run (shell "opam repo remove default && opam repo add opam /src")) (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.16.0 ocamlfind.1.9.6")) (env DUNE_CACHE enabled) (env DUNE_CACHE_TRANSPORT direct) (env DUNE_CACHE_DUPLICATION copy) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy oplsr.5.0.1 parany.10.0.2 ocamlfind.1.9.6 num.1.5-1 minicli.5.0.2 dune.3.16.0 dolog.4.0.0 cpu.2.0.0 cpm.12.2.0 conf-r.1.0.0 conf-autoconf.0.2 camlp-streams.5.0.1 batteries.3.8.0 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) (run (shell "opam exec -- ~/voodoo-prep -u oplsr:5bbc5ef120570110292fe41f58e1e4e9,parany:0999a6e125dd1e936c3bfb4c062a33b4,cpm:4e827cc4d44c6075ad495bbe83b12199")) (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.775562') && (for DATA in prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0,cpm.12.2.0-4e827cc4d44c6075ad495bbe83b12199,cpm.12.2.0 prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2,parany.10.0.2-0999a6e125dd1e936c3bfb4c062a33b4,parany.10.0.2 prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1,oplsr.5.0.1-5bbc5ef120570110292fe41f58e1e4e9,oplsr.5.0.1; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0,cpm.12.2.0-4e827cc4d44c6075ad495bbe83b12199,cpm.12.2.0 prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2,parany.10.0.2-0999a6e125dd1e936c3bfb4c062a33b4,parany.10.0.2 prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1,oplsr.5.0.1-5bbc5ef120570110292fe41f58e1e4e9,oplsr.5.0.1; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0,cpm.12.2.0-4e827cc4d44c6075ad495bbe83b12199,cpm.12.2.0 prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2,parany.10.0.2-0999a6e125dd1e936c3bfb4c062a33b4,parany.10.0.2 prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1,oplsr.5.0.1-5bbc5ef120570110292fe41f58e1e4e9,oplsr.5.0.1; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) ) END-OF-SPEC ocluster-client submit-obuilder https://github.com/ocaml/opam-repository.git d564f3d2efdce25d10d3c215507cfa29bef86103 --local-file prep.spec \ --pool linux-x86_64 --connect ocluster-submission.cap --cache-hint docs-universe-prep-5.1.1 \ --secret ssh_privkey:id_rsa --secret ssh_pubkey:id_rsa.pub--secret ssh_config:ssh_config 2024-09-12 11:20.16: RETRYING: 2024-09-12/083445-voodoo-prep-eccce3 Number of retries: 0 (retriable error condition) Building on doris.caelum.ci.dev All commits already cached Updating files: 65% (20932/31944) Updating files: 66% (21084/31944) Updating files: 67% (21403/31944) Updating files: 68% (21722/31944) Updating files: 69% (22042/31944) Updating files: 70% (22361/31944) Updating files: 71% (22681/31944) Updating files: 72% (23000/31944) Updating files: 73% (23320/31944) Updating files: 74% (23639/31944) Updating files: 75% (23958/31944) Updating files: 76% (24278/31944) Updating files: 77% (24597/31944) Updating files: 78% (24917/31944) Updating files: 79% (25236/31944) Updating files: 80% (25556/31944) Updating files: 81% (25875/31944) Updating files: 82% (26195/31944) Updating files: 83% (26514/31944) Updating files: 84% (26833/31944) Updating files: 85% (27153/31944) Updating files: 86% (27472/31944) Updating files: 87% (27792/31944) Updating files: 88% (28111/31944) Updating files: 89% (28431/31944) Updating files: 90% (28750/31944) Updating files: 91% (29070/31944) Updating files: 92% (29389/31944) Updating files: 93% (29708/31944) Updating files: 94% (30028/31944) Updating files: 95% (30347/31944) Updating files: 96% (30667/31944) Updating files: 97% (30986/31944) Updating files: 98% (31306/31944) Updating files: 99% (31625/31944) Updating files: 100% (31944/31944) Updating files: 100% (31944/31944), done. HEAD is now at d564f3d2ef Merge pull request #26178 from Leonidas-from-XIV/num-dune-pkg (build "tools" …) (from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) 2024-09-12 11:13.10 ---> using "4c7d809399bb207da0fd7e41f1744e0b774f33b83c9f971e29ee4e527ca6a31c" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 11:13.10 ---> using "dfe5e4646be142d6fc9d6a77140d209b028acc1d77475a5901c4ed3a5b4fb944" from cache /home/opam: (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 1s (406 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libpkgconf3 pkgconf pkgconf-bin Suggested packages: m4-doc The following NEW packages will be installed: libpkgconf3 m4 pkg-config pkgconf pkgconf-bin 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 392 kB of archives. After this operation, 969 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 392 kB in 0s (6833 kB/s) Selecting previously unselected package libpkgconf3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18764 files and directories currently installed.) Preparing to unpack .../libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../pkgconf_1.8.1-1_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Setting up m4 (1.4.19-3) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 2024-09-12 11:13.10 ---> using "00bd9b10ee4005c80d7af1faad8dfcb4e6ab122a52aeb43a33fdea8ec26bd562" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 This will pin the following packages: voodoo-prep, voodoo-lib, voodoo-gen, voodoo-do. Continue? [Y/n] y Package voodoo-prep does not exist, create as a NEW package? [Y/n] y [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-prep is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-lib does not exist, create as a NEW package? [Y/n] y [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-lib is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-gen does not exist, create as a NEW package? [Y/n] y [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-gen is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-do does not exist, create as a NEW package? [Y/n] y [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-do is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # No extra OS packages requirements found. # All required OS packages found. # Now letting opam install the packages <><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><> [voodoo-prep.~dev] no changes from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 The following actions will be performed: - install ocamlbuild 0.15.0 [required by bos] - install dune 3.16.0 [required by voodoo-prep] - install ocamlfind 1.9.6 [required by bos] - install cmdliner 1.3.0 [required by voodoo-prep] - install seq base [required by re] - install swhid_core 0.1 [required by opam-core] - install stdlib-shims 0.3.0 [required by ocamlgraph, sha] - install opam-file-format 2.1.6 [required by opam-format] - install topkg 1.0.7 [required by bos] - install re 1.12.0 [required by opam-format] - install sha 1.15.4 [required by opam-core] - install ocamlgraph 2.1.0 [required by opam-core] - install uutf 1.0.3 [required by opam-core] - install rresult 0.7.0 [required by bos] - install fmt 0.9.0 [required by bos] - install astring 0.8.5 [required by bos] - install jsonm 1.0.2 [required by opam-core] - install logs 0.7.0 [required by bos] - install fpath 0.7.3 [required by voodoo-prep] - install opam-core 2.2.1 [required by opam-format] - install bos 0.2.1 [required by voodoo-prep] - install opam-format 2.2.1 [required by voodoo-prep] - install voodoo-prep ~dev* ===== 23 to install ===== <><> Gathering sources ><><><><><><><><><><><><><><><><><><><><><><><><><><><><> [astring.0.8.5] found in cache [bos.0.2.1] found in cache [cmdliner.1.3.0] found in cache [dune.3.16.0] found in cache [fmt.0.9.0] found in cache [fpath.0.7.3] found in cache [jsonm.1.0.2] found in cache [logs.0.7.0] found in cache [ocamlbuild.0.15.0] found in cache [ocamlfind.1.9.6] found in cache [ocamlgraph.2.1.0] found in cache [opam-core.2.2.1] found in cache [opam-file-format.2.1.6] found in cache [opam-format.2.2.1] found in cache [re.1.12.0] found in cache [rresult.0.7.0] found in cache [sha.1.15.4] found in cache [stdlib-shims.0.3.0] found in cache [swhid_core.0.1] found in cache [topkg.1.0.7] found in cache [uutf.1.0.3] found in cache [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> installed seq.base -> installed cmdliner.1.3.0 -> installed ocamlfind.1.9.6 -> installed ocamlbuild.0.15.0 -> installed topkg.1.0.7 -> installed rresult.0.7.0 -> installed uutf.1.0.3 -> installed fmt.0.9.0 -> installed astring.0.8.5 -> installed jsonm.1.0.2 -> installed fpath.0.7.3 -> installed logs.0.7.0 -> installed dune.3.16.0 -> installed stdlib-shims.0.3.0 -> installed swhid_core.0.1 -> installed bos.0.2.1 -> installed opam-file-format.2.1.6 -> installed re.1.12.0 -> installed sha.1.15.4 -> installed ocamlgraph.2.1.0 -> installed opam-core.2.2.1 -> installed opam-format.2.2.1 -> installed voodoo-prep.~dev Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 11:13.10 ---> using "c0ffca0379d767eba96c496d9c3d5a7963b49f0084e5d4e2addf8acd8b75d3e3" from cache /home/opam: (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")) 2024-09-12 11:13.10 ---> using "b3e1bb4015a777b85e55a6a5ba3e4cb907c2d4ba79725c400a82b494d511dc59" from cache 2024-09-12 11:13.10 --> finished "tools" (from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) 2024-09-12 11:13.10 ---> using "4c7d809399bb207da0fd7e41f1744e0b774f33b83c9f971e29ee4e527ca6a31c" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 11:13.10 ---> using "dfe5e4646be142d6fc9d6a77140d209b028acc1d77475a5901c4ed3a5b4fb944" from cache /home/opam: (run (shell "sudo mkdir /src")) 2024-09-12 11:13.10 ---> using "2b0e5c6a092f9ca1bbda95f5b7a2ea41fa9d1fb5a59427c4d5a1765abb041698" from cache /home/opam: (copy (src packages) (dst /src/packages)) 2024-09-12 11:13.11 ---> using "438bed228ae2923bad7be20399d9e9d274f8712cff44f0cf17c080520629bf44" from cache /home/opam: (copy (src repo) (dst /src/repo)) 2024-09-12 11:13.11 ---> using "a6a65b9814eeece81b55441a6f7a3f164f600ba3dceaf4fb27712ac923d76487" from cache /home/opam: (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) Configuring from /home/opam/.opamrc and then from built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted. You may want to back it up before going further. Continue? [Y/n] y Format upgrade done. <><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><> [default] synchronised from file:///home/opam/opam-repository 2024-09-12 11:13.11 ---> using "ca9bed8b9cf19d37b5a2310efc0d1a04f79a39fd1cbc54e4400dd4b6891df990" from cache /home/opam: (run (shell "opam repo remove default && opam repo add opam /src")) Repositories removed from the selections of switch 5.1. Use '--all' to forget about them altogether. [opam] Initialised [NOTE] Repository opam has been added to the selections of switch 5.1 only. Run `opam repository add opam --all-switches|--set-default' to use it in all existing switches, or in newly created switches, respectively. 2024-09-12 11:13.11 ---> using "f78df0949388f091c71d120d9fee3efb2881ae0237067e20213194715f0adaf6" from cache /home/opam: (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) 2024-09-12 11:13.11 ---> using "5b32da5b47fc6489beb407fe41544f01af870e5752588e50051b5486aca707ef" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.16.0 ocamlfind.1.9.6")) The following actions will be performed: - install dune 3.16.0 - install ocamlfind 1.9.6 ===== 2 to install ===== <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved ocamlfind.1.9.6 (cached) -> retrieved dune.3.16.0 (cached) -> installed ocamlfind.1.9.6 -> installed dune.3.16.0 Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 11:13.11 ---> using "edb38aedd89b5252b41b71bb3299b2c34d25402bbed31d4f1ce1dd793ab41ef0" from cache /home/opam: (env DUNE_CACHE enabled) /home/opam: (env DUNE_CACHE_TRANSPORT direct) /home/opam: (env DUNE_CACHE_DUPLICATION copy) /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy oplsr.5.0.1 parany.10.0.2 ocamlfind.1.9.6 num.1.5-1 minicli.5.0.2 dune.3.16.0 dolog.4.0.0 cpu.2.0.0 cpm.12.2.0 conf-r.1.0.0 conf-autoconf.0.2 camlp-streams.5.0.1 batteries.3.8.0 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 0s (845 kB/s) Reading package lists... Building dependency tree... Reading state information... All packages are up to date. Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y The following actions will be performed: - recompile opam-depext 1.2.3 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved opam-depext.1.2.3 (cached) -> removed opam-depext.1.2.3 -> installed opam-depext.1.2.3 Done. <><> opam-depext.1.2.3 installed successfully <><><><><><><><><><><><><><><><><> => opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead # Run eval $(opam env) to update the current shell environment <><> Carrying on to "opam depext -viy oplsr.5.0.1 parany.10.0.2 ocamlfind.1.9.6 num.1.5-1 minicli.5.0.2 dune.3.16.0 dolog.4.0.0 cpu.2.0.0 cpm.12.2.0 conf-r.1.0.0 conf-autoconf.0.2 camlp-streams.5.0.1 batteries.3.8.0" Since version 2.1, opam now handles external dependencies alongside OCaml ones, and the `depext` plugin interface is provided for backwards compatibility only. Consider using your usual `opam install` command to install both OCaml and system dependencies, or `opam install <pkg> --depext-only` if you want to only install external dependencies. # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # The following system packages are needed: autoconf r-base-core [NOTE] Package dune is already installed (current version is 3.16.0). [NOTE] Package ocamlfind is already installed (current version is 1.9.6). The following actions will be performed: - install conf-autoconf 0.2 - install conf-r 1.0.0 - install dolog 4.0.0 - install minicli 5.0.2 - install camlp-streams 5.0.1 - install num 1.5-1 - install cpu 2.0.0 - install batteries 3.8.0 - install parany 10.0.2 - install cpm 12.2.0 - install oplsr 5.0.1 ===== 11 to install ===== The following system packages will first need to be installed: autoconf r-base-core <><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><> Let opam run your package manager to install the required system packages? (answer 'n' for other options) [Y/n] y + /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "r-base-core" - debconf: delaying package configuration, since apt-utils is not installed - Selecting previously unselected package libdbus-1-3:amd64. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18764 files and directories currently installed.) - Preparing to unpack .../000-libdbus-1-3_1.14.10-1~deb12u1_amd64.deb ... - Unpacking libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... - Selecting previously unselected package dbus-bin. - Preparing to unpack .../001-dbus-bin_1.14.10-1~deb12u1_amd64.deb ... - Unpacking dbus-bin (1.14.10-1~deb12u1) ... - Selecting previously unselected package dbus-session-bus-common. - Preparing to unpack .../002-dbus-session-bus-common_1.14.10-1~deb12u1_all.deb ... - 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Unpacking zutty (0.14.0.20230218+dfsg1-1) ... - Setting up libtext-iconv-perl:amd64 (1.7-8) ... - Setting up libgraphite2-3:amd64 (1.3.14-1) ... - Setting up libxcb-dri3-0:amd64 (1.15-1) ... - Setting up libpixman-1-0:amd64 (0.42.2-1) ... - Setting up bzip2-doc (1.0.8-5) ... - Setting up libwayland-server0:amd64 (1.21.0-1) ... - Setting up libx11-xcb1:amd64 (2:1.8.4-2+deb12u2) ... - Setting up libpciaccess0:amd64 (0.17-2) ... - Setting up fontconfig (2.14.1-4) ... - Regenerating fonts cache... - done. - Setting up libapparmor1:amd64 (3.0.8-3) ... - Setting up libtie-ixhash-perl (1.23-4) ... - Setting up libicu72:amd64 (72.1-3) ... - Setting up libxcb-xfixes0:amd64 (1.15-1) ... - Setting up r-doc-html (4.2.2.20221110-2) ... - Setting up libpcre16-3:amd64 (2:8.39-15) ... - Setting up libxi6:amd64 (2:1.8-1+b1) ... - Setting up libfont-afm-perl (1.20-4) ... - Setting up libxrender1:amd64 (1:0.9.10-1.1) ... - Setting up libdatrie1:amd64 (0.2.13-2+b1) ... - Setting up xdg-user-dirs (0.18-1) ... - Setting up libpng-tools (1.6.39-2) ... - Setting up libxcb-render0:amd64 (1.15-1) ... - Setting up libclone-perl:amd64 (0.46-1) ... - Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... - No schema files found: doing nothing. - Setting up libglvnd0:amd64 (1.6.0-1) ... - Setting up libio-stringy-perl (2.111-3) ... - Setting up libhtml-tagset-perl (3.20-6) ... - Setting up libauthen-sasl-perl (2.1600-3) ... - Setting up libxcb-glx0:amd64 (1.15-1) ... - Setting up liblwp-mediatypes-perl (6.04-2) ... - Setting up libxcb-shape0:amd64 (1.15-1) ... - Setting up x11-common (1:7.7+23) ... - invoke-rc.d: could not determine current runlevel - invoke-rc.d: policy-rc.d denied execution of restart. - Setting up libtry-tiny-perl (0.31-2) ... - Setting up libsensors-config (1:3.6.0-7.1) ... - Setting up libxxf86dga1:amd64 (2:1.1.5-1) ... - Setting up perl-openssl-defaults:amd64 (7+b1) ... - Setting up m4 (1.4.19-3) ... - Setting up libencode-locale-perl (1.05-3) ... - Setting up libxcb-shm0:amd64 (1.15-1) ... - Setting up libcairo2:amd64 (1.16.0-7) ... - Setting up libpcre2-16-0:amd64 (10.42-1) ... - Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... - Setting up libxcb-present0:amd64 (1.15-1) ... - Setting up libpcre3:amd64 (2:8.39-15) ... - Setting up zip (3.0-13) ... - Setting up libfontenc1:amd64 (1:1.1.4-1) ... - Setting up autotools-dev (20220109.1) ... - Setting up libz3-4:amd64 (4.8.12-3.1) ... - Setting up libpcre2-32-0:amd64 (10.42-1) ... - Setting up libblas3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode - Setting up libglib2.0-data (2.74.6-2+deb12u3) ... - Setting up libpkgconf3:amd64 (1.8.1-1) ... - Setting up libgles2:amd64 (1.6.0-1) ... - Setting up libdata-dump-perl (1.25-1) ... - Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-2) ... - Setting up libxfixes3:amd64 (1:6.0.0-2) ... - Setting up libxcb-sync1:amd64 (1.15-1) ... - Setting up libipc-system-simple-perl (1.30-2) ... - Setting up libxml-xpathengine-perl (0.14-2) ... - Setting up libncurses6:amd64 (6.4-4) ... - Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... - Setting up libfribidi0:amd64 (1.0.8-2.1) ... - Setting up libxinerama1:amd64 (2:1.1.4-3) ... - Setting up libxv1:amd64 (2:1.0.11-1.1) ... - Setting up libpcre32-3:amd64 (2:8.39-15) ... - Setting up libio-html-perl (1.004-3) ... - Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... - Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... - Setting up icu-devtools (72.1-3) ... - Setting up pkgconf-bin (1.8.1-1) ... - Setting up libsensors5:amd64 (1:3.6.0-7.1) ... - Setting up libglapi-mesa:amd64 (22.3.6-1+deb12u1) ... - Setting up libgfortran5:amd64 (12.2.0-14) ... - Setting up autoconf (2.71-3) ... - Setting up libtimedate-perl (2.3300-2) ... - Setting up libregexp-ipv6-perl (0.03-3) ... - Setting up liblzma-dev:amd64 (5.4.1-0.2) ... - Setting up libxcb-dri2-0:amd64 (1.15-1) ... - Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... - Setting up libpcre2-posix3:amd64 (10.42-1) ... - Setting up sensible-utils (0.0.17+nmu1) ... - Setting up libxshmfence1:amd64 (1.3-1) ... - Setting up libxcb-randr0:amd64 (1.15-1) ... - Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ... - Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... - Setting up libthai-data (0.1.29-1) ... - Setting up libxss1:amd64 (1:1.2.3-1) ... - Setting up libxkbfile1:amd64 (1:1.1.0-1) ... - Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... - Setting up libdrm-common (2.4.114-1) ... - Setting up libelf1:amd64 (0.188-2.1) ... - Setting up libxcomposite1:amd64 (1:0.4.5-1) ... - Setting up libicu-dev:amd64 (72.1-3) ... - Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... - Setting up xdg-utils (1.1.3-4.1) ... - update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode - Setting up liburi-perl (5.17-1) ... - Setting up dbus-bin (1.14.10-1~deb12u1) ... - Setting up libx11-protocol-perl (0.56-9) ... - Setting up libblas-dev:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode - Setting up libbz2-dev:amd64 (1.0.8-5+b1) ... - Setting up libwayland-client0:amd64 (1.21.0-1) ... - Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... - Setting up automake (1:1.16.5-1.3) ... - update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode - Setting up libpcrecpp0v5:amd64 (2:8.39-15) ... - Setting up libice6:amd64 (2:1.0.10-1) ... - Setting up libhttp-date-perl (6.05-2) ... - Setting up liblapack3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode - Setting up libxft2:amd64 (2.3.6-1) ... - Setting up libncurses-dev:amd64 (6.4-4) ... - Setting up libfile-basedir-perl (0.09-2) ... - Setting up libfile-listing-perl (6.15-1) ... - Setting up libpcre2-dev:amd64 (10.42-1) ... - Setting up libpcre3-dev:amd64 (2:8.39-15) ... - Setting up libxtst6:amd64 (2:1.2.3-1.1) ... - Setting up libtk8.6:amd64 (8.6.13-2) ... - Setting up libxcursor1:amd64 (1:1.2.1-1) ... - Setting up libpng-dev:amd64 (1.6.39-2) ... - Setting up libjpeg-dev:amd64 (1:2.1.5-2) ... - Setting up libnet-http-perl (6.22-1) ... - Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... - Setting up dbus-daemon (1.14.10-1~deb12u1) ... - Setting up libreadline-dev:amd64 (8.2-1.3) ... - Setting up pkgconf:amd64 (1.8.1-1) ... - Setting up libthai0:amd64 (0.1.29-1) ... - Setting up gfortran-12 (12.2.0-14) ... - Setting up dbus (1.14.10-1~deb12u1) ... - invoke-rc.d: could not determine current runlevel - invoke-rc.d: policy-rc.d denied execution of start. - Setting up shared-mime-info (2.2-1) ... - Setting up liblapack-dev:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode - Setting up pkg-config:amd64 (1.8.1-1) ... - Setting up ucf (3.0043+nmu1) ... - Setting up libfile-desktopentry-perl (0.22-3) ... - Setting up libwww-robotrules-perl (6.02-1) ... - Setting up libdrm2:amd64 (2.4.114-1+b1) ... - Setting up libhtml-parser-perl:amd64 (3.81-1) ... - Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... - Setting up libncurses5-dev:amd64 (6.4-4) ... - Setting up libsm6:amd64 (2:1.2.3-1) ... - Setting up libio-socket-ssl-perl (2.081-2) ... - Setting up libhttp-message-perl (6.44-1) ... - Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... - Setting up libhtml-form-perl (6.11-1) ... - Setting up libfile-mimeinfo-perl (0.33-1) ... - Setting up libpaper1:amd64 (1.1.29) ... - - Creating config file /etc/papersize with new version - Setting up libhttp-negotiate-perl (6.01-2) ... - Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... - Setting up libgbm1:amd64 (22.3.6-1+deb12u1) ... - Setting up libhttp-cookies-perl (6.10-1) ... - Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... - Setting up libhtml-tree-perl (5.07-3) ... - Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... - Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... - Setting up libhtml-format-perl (2.16-2) ... - Setting up libpaper-utils (1.1.29) ... - Setting up gfortran (4:12.2.0-3) ... - update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode - update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode - Setting up libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up libnet-smtp-ssl-perl (1.04-2) ... - Setting up libmailtools-perl (2.21-2) ... - Setting up libxt6:amd64 (1:1.2.1-1.1) ... - Setting up libhttp-daemon-perl (6.16-1) ... - Setting up libegl1:amd64 (1.6.0-1) ... - Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libxmu6:amd64 (2:1.1.3-3) ... - Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up libglx0:amd64 (1.6.0-1) ... - Setting up libxaw7:amd64 (2:1.0.14-1) ... - Setting up x11-xserver-utils (7.7+9+b1) ... - Setting up libgl1:amd64 (1.6.0-1) ... - Setting up r-base-core (4.2.2.20221110-2) ... - - Creating config file /etc/R/Renviron with new version - Setting up r-cran-lattice (0.20-45-3) ... - Setting up r-cran-nlme (3.1.162-1) ... - Setting up zutty (0.14.0.20230218+dfsg1-1) ... - update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode - Setting up r-cran-cluster (2.1.4-1) ... - Setting up x11-utils (7.7+5) ... - Setting up r-cran-nnet (7.3-18-1) ... - Setting up r-cran-codetools (0.2-19-1) ... - Setting up r-cran-boot (1.3-28.1-1) ... - Setting up r-base-dev (4.2.2.20221110-2) ... - Setting up r-cran-spatial (7.3-16-1) ... - Setting up r-cran-mass (7.3-58.2-1) ... - Setting up r-cran-foreign (0.8.84-1) ... - Setting up r-cran-matrix (1.5-3-1) ... - Setting up r-cran-kernsmooth (2.23-20-1) ... - Setting up r-cran-mgcv (1.8-41-1) ... - Setting up r-cran-class (7.3-21-1) ... - Setting up r-cran-survival (3.5-3-1) ... - Setting up r-cran-rpart (4.1.19-1) ... - Setting up r-recommended (4.2.2.20221110-2) ... - Setting up liblwp-protocol-https-perl (6.10-1) ... - Setting up libwww-perl (6.68-1) ... - Setting up libxml-parser-perl (2.46-4) ... - Setting up libxml-twig-perl (1:3.52-2) ... - Setting up libnet-dbus-perl (1.2.0-2) ... - Processing triggers for libc-bin (2.36-9+deb12u8) ... <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> Processing 1/33: Processing 2/33: Processing 3/33: -> retrieved conf-r.1.0.0 (cached) Processing 4/33: Processing 5/33: Processing 6/33: [conf-autoconf: autoconf] Processing 7/33: [conf-autoconf: autoconf] [conf-r: R CMD] -> retrieved batteries.3.8.0 (cached) Processing 8/33: [conf-autoconf: autoconf] [conf-r: R CMD] -> retrieved camlp-streams.5.0.1 (cached) Processing 9/33: [conf-autoconf: autoconf] [conf-r: R CMD] Processing 10/33: [camlp-streams: dune build] [conf-autoconf: autoconf] [conf-r: R CMD] -> retrieved cpm.12.2.0 (cached) Processing 11/33: [camlp-streams: dune build] [conf-autoconf: autoconf] [conf-r: R CMD] - autoconf (GNU Autoconf) 2.71 - Copyright (C) 2021 Free Software Foundation, Inc. - License GPLv3+/Autoconf: GNU GPL version 3 or later - <https://gnu.org/licenses/gpl.html>, <https://gnu.org/licenses/exceptions.html> - This is free software: you are free to change and redistribute it. - There is NO WARRANTY, to the extent permitted by law. - - Written by David J. MacKenzie and Akim Demaille. -> compiled conf-autoconf.0.2 Processing 11/33: [camlp-streams: dune build] [conf-r: R CMD] -> installed conf-autoconf.0.2 Processing 12/33: [camlp-streams: dune build] [conf-r: R CMD] -> retrieved cpu.2.0.0 (cached) Processing 13/33: [camlp-streams: dune build] [conf-r: R CMD] Processing 14/33: [camlp-streams: dune build] [conf-r: R CMD] [cpu: autoconf] -> retrieved dolog.4.0.0 (cached) Processing 15/33: [camlp-streams: dune build] [conf-r: R CMD] [cpu: autoconf] Processing 16/33: [camlp-streams: dune build] [conf-r: R CMD] [cpu: autoconf] [dolog: dune build] -> retrieved minicli.5.0.2 (cached) Processing 17/33: [camlp-streams: dune build] [conf-r: R CMD] [cpu: autoconf] [dolog: dune build] Processing 18/33: [camlp-streams: dune build] [conf-r: R CMD] [cpu: autoconf] [dolog: dune build] [minicli: dune build] -> retrieved num.1.5-1 (cached) [num: patch] applying num-in-findlib-dir.patch Processing 19/33: [camlp-streams: dune build] [conf-r: R CMD] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [num: patch] -> retrieved oplsr.5.0.1 (cached) -> retrieved parany.10.0.2 (cached) Processing 19/33: [camlp-streams: dune build] [conf-r: R CMD] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [num: make opam-modern] -> compiled conf-r.1.0.0 Processing 19/33: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [num: make opam-modern] -> installed conf-r.1.0.0 Processing 20/33: [camlp-streams: dune build] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [num: make opam-modern] - configure.ac:8: warning: The macro `AC_HEADER_STDC' is obsolete. - configure.ac:8: You should run autoupdate. - ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... - configure.ac:8: the top level Processing 20/33: [camlp-streams: dune build] [cpu: autoheader] [dolog: dune build] [minicli: dune build] [num: make opam-modern] -> compiled dolog.4.0.0 Processing 20/33: [camlp-streams: dune build] [cpu: autoheader] [minicli: dune build] [num: make opam-modern] -> installed dolog.4.0.0 Processing 21/33: [camlp-streams: dune build] [cpu: autoheader] [minicli: dune build] [num: make opam-modern] -> compiled minicli.5.0.2 Processing 21/33: [camlp-streams: dune build] [cpu: autoheader] [num: make opam-modern] -> installed minicli.5.0.2 Processing 22/33: [camlp-streams: dune build] [cpu: autoheader] [num: make opam-modern] -> compiled camlp-streams.5.0.1 Processing 22/33: [cpu: autoheader] [num: make opam-modern] -> installed camlp-streams.5.0.1 Processing 23/33: [cpu: autoheader] [num: make opam-modern] Processing 23/33: [cpu: ./configure] [num: make opam-modern] - /usr/bin/make -C src all - make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/num.1.5-1/src' - ocamlc -ccopt -DBNG_ARCH_amd64 -c bng.c - ocamlc -ccopt -DBNG_ARCH_amd64 -c nat_stubs.c - ocamlmklib -oc nums bng.o nat_stubs.o - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml - ocamlmklib -o nums -oc nums -linkall int_misc.cmo nat.cmo big_int.cmo arith_flags.cmo ratio.cmo num.cmo arith_status.cmo - cp ../toplevel/num_top_printers.mli ../toplevel/num_top.mli ../toplevel/num_top_printers.ml ../toplevel/num_top.ml . - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -a -o num_top.cma num_top_printers.cmo num_top.cmo - echo 'version = "1.6~dev"' > META.top - cat META.num-top.in >> META.top - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml - ocamlmklib -o nums -oc nums -linkall int_misc.cmx nat.cmx big_int.cmx arith_flags.cmx ratio.cmx num.cmx arith_status.cmx - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -I . -shared -o nums.cmxs nums.cmxa - make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/num.1.5-1/src' - cp src/num-modern.install num.install -> compiled num.1.5-1 Processing 23/33: [cpu: ./configure] -> installed num.1.5-1 Processing 24/33: [cpu: ./configure] Processing 25/33: [batteries: dune build] [cpu: ./configure] - checking for ocamlc... ocamlc - OCaml version is 5.1.1 - OCaml library path is /home/opam/.opam/5.1/lib/ocaml - checking for ocamlopt... ocamlopt - checking for ocamlc.opt... ocamlc.opt - checking for ocamlopt.opt... ocamlopt.opt - checking for dynlink.cmxa... no - checking for ocaml... ocaml - checking for ocamldep... ocamldep - checking for ocamlmktop... ocamlmktop - checking for ocamlmklib... ocamlmklib - checking for ocamldoc... ocamldoc - checking for ocamlbuild... no - checking for gcc... gcc - checking whether the C compiler works... yes - checking for C compiler default output file name... a.out - checking for suffix of executables... - checking whether we are cross compiling... no - checking for suffix of object files... o - checking whether the compiler supports GNU C... yes - checking whether gcc accepts -g... yes - checking for gcc option to enable C11 features... none needed - checking for stdio.h... yes - checking for stdlib.h... yes - checking for string.h... yes - checking for inttypes.h... yes - checking for stdint.h... yes - checking for strings.h... yes - checking for sys/stat.h... yes - checking for sys/types.h... yes - checking for unistd.h... yes - checking for grep that handles long lines and -e... /usr/bin/grep - checking for egrep... /usr/bin/grep -E - checking for sched.h... yes - checking for gcc options needed to detect all undeclared functions... none needed - checking whether sched_setaffinity is declared... yes - checking for mach/thread_policy.h... no - checking whether thread_policy_set is declared... no - configure: creating ./config.status - config.status: creating src/config.h Processing 25/33: [batteries: dune build] [cpu: dune build] -> compiled cpu.2.0.0 Processing 25/33: [batteries: dune build] -> installed cpu.2.0.0 Processing 26/33: [batteries: dune build] Processing 27/33: [batteries: dune build] [parany: dune build] -> compiled parany.10.0.2 Processing 27/33: [batteries: dune build] -> installed parany.10.0.2 Processing 28/33: [batteries: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "batteries" "-j" "39" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/batteries.3.8.0) -> compiled batteries.3.8.0 -> installed batteries.3.8.0 Processing 30/33: [cpm: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "cpm" "-j" "39" (CWD=/home/opam/.opam/5.1/.opam-switch/build/cpm.12.2.0) -> compiled cpm.12.2.0 -> installed cpm.12.2.0 Processing 32/33: [oplsr: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "oplsr" "-j" "39" (CWD=/home/opam/.opam/5.1/.opam-switch/build/oplsr.5.0.1) -> compiled oplsr.5.0.1 -> installed oplsr.5.0.1 Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 11:14.56 ---> saved as "3f3dd579c9203e049694b92a959c33f71c935738f4c10500ea4cf38fa006ff90" /home/opam: (run (shell "opam exec -- ~/voodoo-prep -u oplsr:5bbc5ef120570110292fe41f58e1e4e9,parany:0999a6e125dd1e936c3bfb4c062a33b4,cpm:4e827cc4d44c6075ad495bbe83b12199")) 2024-09-12 11:14.59 ---> saved as "0e47d184fe29eef7d5afb0ffa3269793434e46f6b67873f6e25cc049ade7368c" /home/opam: (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.775562') && (for DATA in prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0,cpm.12.2.0-4e827cc4d44c6075ad495bbe83b12199,cpm.12.2.0 prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2,parany.10.0.2-0999a6e125dd1e936c3bfb4c062a33b4,parany.10.0.2 prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1,oplsr.5.0.1-5bbc5ef120570110292fe41f58e1e4e9,oplsr.5.0.1; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0,cpm.12.2.0-4e827cc4d44c6075ad495bbe83b12199,cpm.12.2.0 prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2,parany.10.0.2-0999a6e125dd1e936c3bfb4c062a33b4,parany.10.0.2 prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1,oplsr.5.0.1-5bbc5ef120570110292fe41f58e1e4e9,oplsr.5.0.1; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0,cpm.12.2.0-4e827cc4d44c6075ad495bbe83b12199,cpm.12.2.0 prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2,parany.10.0.2-0999a6e125dd1e936c3bfb4c062a33b4,parany.10.0.2 prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1,oplsr.5.0.1-5bbc5ef120570110292fe41f58e1e4e9,oplsr.5.0.1; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) 0.775562 prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/doc/ prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/doc/cpm/ prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/doc/cpm/README.md prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/ prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/ prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm.ocamlobjinfo prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/.private/ prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/.private/cpm__MyList.cmi prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/.private/cpm__MyList.cmt prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/META prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm.cmi prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm.cmt prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm__MakeROC.cmi prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm__MakeROC.cmt prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm__RegrStats.cmi prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm__RegrStats.cmt prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm__TopKeeper.cmi prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm__TopKeeper.cmt prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm__TopKeeper.cmti prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm__Utls.cmi prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/cpm__Utls.cmt prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/lib/cpm/dune-package prep/universes/4e827cc4d44c6075ad495bbe83b12199/cpm/12.2.0/opam prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/doc/ prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/doc/parany/ prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/doc/parany/LICENSE prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/doc/parany/README.md prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/lib/ prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/lib/parany/ prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/lib/parany/parany.ocamlobjinfo prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/lib/parany/META prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/lib/parany/dune-package prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/lib/parany/parany.cmi prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/lib/parany/parany.cmt prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/lib/parany/parany.cmti prep/universes/0999a6e125dd1e936c3bfb4c062a33b4/parany/10.0.2/opam prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/doc/ prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/doc/oplsr/ prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/doc/oplsr/LICENSE prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/doc/oplsr/README.md prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/ prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/ prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/oplsr.ocamlobjinfo prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/META prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/dune-package prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/oplsr.cmi prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/oplsr.cmt prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/oplsr__PLS.cmi prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/oplsr__PLS.cmt prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/oplsr__PLS.cmti prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/oplsr__Utls.cmi prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/lib/oplsr/oplsr__Utls.cmt prep/universes/5bbc5ef120570110292fe41f58e1e4e9/oplsr/5.0.1/opam Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. HASHES:cpm.12.2.0-4e827cc4d44c6075ad495bbe83b12199:41f27f9ccf8b2c8b6bebc10cccd257fd359fbb79f5d0b983d128efd797d90694 HASHES:parany.10.0.2-0999a6e125dd1e936c3bfb4c062a33b4:6a8d1ae42cdfaa608e15435e65149618f41ad150362a00e6da9939f2b65273b8 HASHES:oplsr.5.0.1-5bbc5ef120570110292fe41f58e1e4e9:0091f24ec5a3fa8de1af163003e38c73a91e27dfd8eb519cccb3fff3ac569907 2024-09-12 11:15.01 ---> saved as "a3f9f95db8b7bbf95b050004fe5bef44f613c37d3ed9505408e09848c9a02bb1" Job succeeded 2024-09-12 11:24.30: oplsr.5.0.1-5bbc5ef120570110292fe41f58e1e4e9 -> 0091f24ec5a3fa8de1af163003e38c73a91e27dfd8eb519cccb3fff3ac569907 2024-09-12 11:24.30: parany.10.0.2-0999a6e125dd1e936c3bfb4c062a33b4 -> 6a8d1ae42cdfaa608e15435e65149618f41ad150362a00e6da9939f2b65273b8 2024-09-12 11:24.30: cpm.12.2.0-4e827cc4d44c6075ad495bbe83b12199 -> 41f27f9ccf8b2c8b6bebc10cccd257fd359fbb79f5d0b983d128efd797d90694 2024-09-12 11:24.30: Job succeeded