Build:
- 0
2024-09-12 08:34.43: New job: Voodoo prep svmwrap.5.1.1; fc18dadffbd65f2aa59dd6b1ef25e803 2024-09-12 08:34.43: Connecting to build cluster… 2024-09-12 08:34.43: Waiting for resource in pool OCluster 2024-09-12 13:33.15: Waiting for worker… 2024-09-12 13:36.28: Got resource from pool OCluster 2024-09-12 13:36.28: Using cache hint "docs-universe-prep-5.1.1" To reproduce locally: cat > prep.spec <<'END-OF-SPEC' ((build tools ((from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")))) (from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (shell "sudo mkdir /src")) (copy (src packages) (dst /src/packages)) (copy (src repo) (dst /src/repo)) (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) (run (shell "opam repo remove default && opam repo add opam /src")) (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.16.0 ocamlfind.1.9.6")) (env DUNE_CACHE enabled) (env DUNE_CACHE_TRANSPORT direct) (env DUNE_CACHE_DUPLICATION copy) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy svmwrap.5.1.1 vector3.1.0.0 stdlib-shims.0.3.0 stdcompat.19 sexplib0.v0.17.0 pyml.20231101 ppxlib.0.33.0 ppx_derivers.1.2.1 parany.14.0.1 ocamlgraph.2.1.0 ocamlfind.1.9.6 ocaml-compiler-libs.v0.12.4 num.1.5-1 nlopt.0.7.0 molenc.16.23.0 minicli.5.0.2 line_oriented.1.3.0 host-arch-x86_64.1 extunix.0.4.2 dune-configurator.3.16.0 dune.3.16.0 dolog.6.0.0 dokeysto.4.0.1 csexp.1.5.2 cpu.2.0.0 cpm.12.2.0 conf-which.1 conf-rdkit.1 conf-python-3.9.0.0 conf-pkg-config.3 conf-nlopt.1 conf-libsvm-tools.1.0.0 conf-graphviz.0.1 conf-autoconf.0.2 camlp-streams.5.0.1 bst.7.1.0 batteries.3.8.0 base-bytes.base 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) (run (shell "opam exec -- ~/voodoo-prep -u svmwrap:fc18dadffbd65f2aa59dd6b1ef25e803,nlopt:91563736edbe94b82f78dd25fe1f4cfe")) (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.055928') && (for DATA in prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0,nlopt.0.7.0-91563736edbe94b82f78dd25fe1f4cfe,nlopt.0.7.0 prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1,svmwrap.5.1.1-fc18dadffbd65f2aa59dd6b1ef25e803,svmwrap.5.1.1; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0,nlopt.0.7.0-91563736edbe94b82f78dd25fe1f4cfe,nlopt.0.7.0 prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1,svmwrap.5.1.1-fc18dadffbd65f2aa59dd6b1ef25e803,svmwrap.5.1.1; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0,nlopt.0.7.0-91563736edbe94b82f78dd25fe1f4cfe,nlopt.0.7.0 prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1,svmwrap.5.1.1-fc18dadffbd65f2aa59dd6b1ef25e803,svmwrap.5.1.1; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) ) END-OF-SPEC ocluster-client submit-obuilder https://github.com/ocaml/opam-repository.git 878dbea3ca0d3823089477f3d994023aa23bfc4d --local-file prep.spec \ --pool linux-x86_64 --connect ocluster-submission.cap --cache-hint docs-universe-prep-5.1.1 \ --secret ssh_privkey:id_rsa --secret ssh_pubkey:id_rsa.pub--secret ssh_config:ssh_config 2024-09-12 13:36.28: RETRYING: 2024-09-12/083443-voodoo-prep-e233fb Number of retries: 0 (retriable error condition) Building on doris.caelum.ci.dev All commits already cached Updating files: 71% (23108/32167) Updating files: 72% (23161/32167) Updating files: 73% (23482/32167) Updating files: 74% (23804/32167) Updating files: 75% (24126/32167) Updating files: 76% (24447/32167) Updating files: 77% (24769/32167) Updating files: 78% (25091/32167) Updating files: 79% (25412/32167) Updating files: 80% (25734/32167) Updating files: 81% (26056/32167) Updating files: 82% (26377/32167) Updating files: 83% (26699/32167) Updating files: 84% (27021/32167) Updating files: 85% (27342/32167) Updating files: 86% (27664/32167) Updating files: 87% (27986/32167) Updating files: 88% (28307/32167) Updating files: 89% (28629/32167) Updating files: 90% (28951/32167) Updating files: 91% (29272/32167) Updating files: 92% (29594/32167) Updating files: 93% (29916/32167) Updating files: 94% (30237/32167) Updating files: 95% (30559/32167) Updating files: 96% (30881/32167) Updating files: 97% (31202/32167) Updating files: 98% (31524/32167) Updating files: 99% (31846/32167) Updating files: 100% (32167/32167) Updating files: 100% (32167/32167), done. HEAD is now at 878dbea3ca [new release] extunix (0.4.2) (build "tools" …) (from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) 2024-09-12 13:29.17 ---> using "4c7d809399bb207da0fd7e41f1744e0b774f33b83c9f971e29ee4e527ca6a31c" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 13:29.17 ---> using "dfe5e4646be142d6fc9d6a77140d209b028acc1d77475a5901c4ed3a5b4fb944" from cache /home/opam: (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 1s (406 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libpkgconf3 pkgconf pkgconf-bin Suggested packages: m4-doc The following NEW packages will be installed: libpkgconf3 m4 pkg-config pkgconf pkgconf-bin 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 392 kB of archives. After this operation, 969 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 392 kB in 0s (6833 kB/s) Selecting previously unselected package libpkgconf3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18764 files and directories currently installed.) Preparing to unpack .../libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../pkgconf_1.8.1-1_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Setting up m4 (1.4.19-3) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u8) ... 2024-09-12 13:29.17 ---> using "00bd9b10ee4005c80d7af1faad8dfcb4e6ab122a52aeb43a33fdea8ec26bd562" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 This will pin the following packages: voodoo-prep, voodoo-lib, voodoo-gen, voodoo-do. Continue? [Y/n] y Package voodoo-prep does not exist, create as a NEW package? [Y/n] y [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-prep is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-lib does not exist, create as a NEW package? [Y/n] y [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-lib is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-gen does not exist, create as a NEW package? [Y/n] y [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-gen is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-do does not exist, create as a NEW package? [Y/n] y [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-do is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # No extra OS packages requirements found. # All required OS packages found. # Now letting opam install the packages <><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><> [voodoo-prep.~dev] no changes from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 The following actions will be performed: - install ocamlbuild 0.15.0 [required by bos] - install dune 3.16.0 [required by voodoo-prep] - install ocamlfind 1.9.6 [required by bos] - install cmdliner 1.3.0 [required by voodoo-prep] - install seq base [required by re] - install swhid_core 0.1 [required by opam-core] - install stdlib-shims 0.3.0 [required by ocamlgraph, sha] - install opam-file-format 2.1.6 [required by opam-format] - install topkg 1.0.7 [required by bos] - install re 1.12.0 [required by opam-format] - install sha 1.15.4 [required by opam-core] - install ocamlgraph 2.1.0 [required by opam-core] - install uutf 1.0.3 [required by opam-core] - install rresult 0.7.0 [required by bos] - install fmt 0.9.0 [required by bos] - install astring 0.8.5 [required by bos] - install jsonm 1.0.2 [required by opam-core] - install logs 0.7.0 [required by bos] - install fpath 0.7.3 [required by voodoo-prep] - install opam-core 2.2.1 [required by opam-format] - install bos 0.2.1 [required by voodoo-prep] - install opam-format 2.2.1 [required by voodoo-prep] - install voodoo-prep ~dev* ===== 23 to install ===== <><> Gathering sources ><><><><><><><><><><><><><><><><><><><><><><><><><><><><> [astring.0.8.5] found in cache [bos.0.2.1] found in cache [cmdliner.1.3.0] found in cache [dune.3.16.0] found in cache [fmt.0.9.0] found in cache [fpath.0.7.3] found in cache [jsonm.1.0.2] found in cache [logs.0.7.0] found in cache [ocamlbuild.0.15.0] found in cache [ocamlfind.1.9.6] found in cache [ocamlgraph.2.1.0] found in cache [opam-core.2.2.1] found in cache [opam-file-format.2.1.6] found in cache [opam-format.2.2.1] found in cache [re.1.12.0] found in cache [rresult.0.7.0] found in cache [sha.1.15.4] found in cache [stdlib-shims.0.3.0] found in cache [swhid_core.0.1] found in cache [topkg.1.0.7] found in cache [uutf.1.0.3] found in cache [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> installed seq.base -> installed cmdliner.1.3.0 -> installed ocamlfind.1.9.6 -> installed ocamlbuild.0.15.0 -> installed topkg.1.0.7 -> installed rresult.0.7.0 -> installed uutf.1.0.3 -> installed fmt.0.9.0 -> installed astring.0.8.5 -> installed jsonm.1.0.2 -> installed fpath.0.7.3 -> installed logs.0.7.0 -> installed dune.3.16.0 -> installed stdlib-shims.0.3.0 -> installed swhid_core.0.1 -> installed bos.0.2.1 -> installed opam-file-format.2.1.6 -> installed re.1.12.0 -> installed sha.1.15.4 -> installed ocamlgraph.2.1.0 -> installed opam-core.2.2.1 -> installed opam-format.2.2.1 -> installed voodoo-prep.~dev Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 13:29.17 ---> using "c0ffca0379d767eba96c496d9c3d5a7963b49f0084e5d4e2addf8acd8b75d3e3" from cache /home/opam: (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")) 2024-09-12 13:29.17 ---> using "b3e1bb4015a777b85e55a6a5ba3e4cb907c2d4ba79725c400a82b494d511dc59" from cache 2024-09-12 13:29.17 --> finished "tools" (from ocaml/opam:debian-12-ocaml-5.1@sha256:75bd1ae213986d8838505129c07e17fc5916ce86841a444e1bf5d1c9bcf5332b) 2024-09-12 13:29.17 ---> using "4c7d809399bb207da0fd7e41f1744e0b774f33b83c9f971e29ee4e527ca6a31c" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-09-12 13:29.17 ---> using "dfe5e4646be142d6fc9d6a77140d209b028acc1d77475a5901c4ed3a5b4fb944" from cache /home/opam: (run (shell "sudo mkdir /src")) 2024-09-12 13:29.17 ---> using "2b0e5c6a092f9ca1bbda95f5b7a2ea41fa9d1fb5a59427c4d5a1765abb041698" from cache /home/opam: (copy (src packages) (dst /src/packages)) 2024-09-12 13:29.19 ---> using "85d9c854b6be8b583acbdffd84dc34932d9e1f452c0abe4f24df1dee51fac91e" from cache /home/opam: (copy (src repo) (dst /src/repo)) 2024-09-12 13:29.19 ---> using "913c1e9edcfefb38e8a878b728fcf68d44164f524c4885656fa54215ccf2ae38" from cache /home/opam: (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) Configuring from /home/opam/.opamrc and then from built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. This development version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted. You may want to back it up before going further. Continue? [Y/n] y Format upgrade done. <><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><> [default] synchronised from file:///home/opam/opam-repository 2024-09-12 13:29.19 ---> using "fcea34d20e78784a21d9ca905a733eb0a2e49c77cf48ec7ab31af5c05378d2f4" from cache /home/opam: (run (shell "opam repo remove default && opam repo add opam /src")) Repositories removed from the selections of switch 5.1. Use '--all' to forget about them altogether. [opam] Initialised [NOTE] Repository opam has been added to the selections of switch 5.1 only. Run `opam repository add opam --all-switches|--set-default' to use it in all existing switches, or in newly created switches, respectively. 2024-09-12 13:29.19 ---> using "fb7dc8584e0ea2b8b71598f9a823f8d2fdb68ae73acc8f73a3265faca873a4bf" from cache /home/opam: (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) 2024-09-12 13:29.19 ---> using "59ef4980f8af0affab04ff4ccbb7be99680565224111ddf8d2e1dccc8b61309a" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.16.0 ocamlfind.1.9.6")) The following actions will be performed: - install dune 3.16.0 - install ocamlfind 1.9.6 ===== 2 to install ===== <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved ocamlfind.1.9.6 (cached) -> retrieved dune.3.16.0 (cached) -> installed ocamlfind.1.9.6 -> installed dune.3.16.0 Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 13:29.19 ---> using "3f91626c17934063fbdb242acf6b2b9606800c5e5a7dada1aee944d4003f4272" from cache /home/opam: (env DUNE_CACHE enabled) /home/opam: (env DUNE_CACHE_TRANSPORT direct) /home/opam: (env DUNE_CACHE_DUPLICATION copy) /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy svmwrap.5.1.1 vector3.1.0.0 stdlib-shims.0.3.0 stdcompat.19 sexplib0.v0.17.0 pyml.20231101 ppxlib.0.33.0 ppx_derivers.1.2.1 parany.14.0.1 ocamlgraph.2.1.0 ocamlfind.1.9.6 ocaml-compiler-libs.v0.12.4 num.1.5-1 nlopt.0.7.0 molenc.16.23.0 minicli.5.0.2 line_oriented.1.3.0 host-arch-x86_64.1 extunix.0.4.2 dune-configurator.3.16.0 dune.3.16.0 dolog.6.0.0 dokeysto.4.0.1 csexp.1.5.2 cpu.2.0.0 cpm.12.2.0 conf-which.1 conf-rdkit.1 conf-python-3.9.0.0 conf-pkg-config.3 conf-nlopt.1 conf-libsvm-tools.1.0.0 conf-graphviz.0.1 conf-autoconf.0.2 camlp-streams.5.0.1 bst.7.1.0 batteries.3.8.0 base-bytes.base 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [11.7 kB] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-09-10-2011.55-F-2024-09-10-2011.55.pdiff [1116 B] Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [179 kB] Fetched 295 kB in 0s (845 kB/s) Reading package lists... Building dependency tree... Reading state information... All packages are up to date. Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y The following actions will be performed: - recompile opam-depext 1.2.3 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved opam-depext.1.2.3 (cached) -> removed opam-depext.1.2.3 -> installed opam-depext.1.2.3 Done. <><> opam-depext.1.2.3 installed successfully <><><><><><><><><><><><><><><><><> => opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead # Run eval $(opam env) to update the current shell environment <><> Carrying on to "opam depext -viy svmwrap.5.1.1 vector3.1.0.0 stdlib-shims.0.3.0 stdcompat.19 sexplib0.v0.17.0 pyml.20231101 ppxlib.0.33.0 ppx_derivers.1.2.1 parany.14.0.1 ocamlgraph.2.1.0 ocamlfind.1.9.6 ocaml-compiler-libs.v0.12.4 num.1.5-1 nlopt.0.7.0 molenc.16.23.0 minicli.5.0.2 line_oriented.1.3.0 host-arch-x86_64.1 extunix.0.4.2 dune-configurator.3.16.0 dune.3.16.0 dolog.6.0.0 dokeysto.4.0.1 csexp.1.5.2 cpu.2.0.0 cpm.12.2.0 conf-which.1 conf-rdkit.1 conf-python-3.9.0.0 conf-pkg-config.3 conf-nlopt.1 conf-libsvm-tools.1.0.0 conf-graphviz.0.1 conf-autoconf.0.2 camlp-streams.5.0.1 bst.7.1.0 batteries.3.8.0 base-bytes.base" Since version 2.1, opam now handles external dependencies alongside OCaml ones, and the `depext` plugin interface is provided for backwards compatibility only. Consider using your usual `opam install` command to install both OCaml and system dependencies, or `opam install <pkg> --depext-only` if you want to only install external dependencies. # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # The following system packages are needed: autoconf debianutils graphviz libnlopt-dev librdkit-dev libsvm-tools pkg-config python3 python3-rdkit [NOTE] Package dune is already installed (current version is 3.16.0). [NOTE] Package host-arch-x86_64 is already installed (current version is 1). [NOTE] Package ocamlfind is already installed (current version is 1.9.6). The following actions will be performed: - install ppx_derivers 1.2.1 - install minicli 5.0.2 - install vector3 1.0.0 - install num 1.5-1 - install dolog 6.0.0 - install conf-autoconf 0.2 - install conf-rdkit 1 - install sexplib0 v0.17.0 - install ocaml-compiler-libs v0.12.4 - install base-bytes base - install stdlib-shims 0.3.0 - install conf-python-3 9.0.0 - install conf-pkg-config 3 - install csexp 1.5.2 - install conf-which 1 - install conf-libsvm-tools 1.0.0 - install camlp-streams 5.0.1 - install stdcompat 19 - install cpu 2.0.0 - install ppxlib 0.33.0 - install ocamlgraph 2.1.0 - install conf-nlopt 1 - install dune-configurator 3.16.0 - install conf-graphviz 0.1 - install batteries 3.8.0 - install pyml 20231101 - install parany 14.0.1 - install nlopt 0.7.0 - install extunix 0.4.2 - install line_oriented 1.3.0 - install cpm 12.2.0 - install bst 7.1.0 - install dokeysto 4.0.1 - install molenc 16.23.0 - install svmwrap 5.1.1 ===== 35 to install ===== The following system packages will first need to be installed: autoconf graphviz libnlopt-dev librdkit-dev libsvm-tools pkg-config python3 python3-rdkit <><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><> Let opam run your package manager to install the required system packages? (answer 'n' for other options) [Y/n] y + /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "graphviz" "libnlopt-dev" "librdkit-dev" "libsvm-tools" "pkg-config" "python3" "python3-rdkit" - debconf: delaying package configuration, since apt-utils is not installed - Selecting previously unselected package libargon2-1:amd64. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% - (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18764 files and directories currently installed.) - Preparing to unpack .../00-libargon2-1_0~20171227-0.3+deb12u1_amd64.deb ... - Unpacking libargon2-1:amd64 (0~20171227-0.3+deb12u1) ... - Selecting previously unselected package dmsetup. - Preparing to unpack .../01-dmsetup_2%3a1.02.185-2_amd64.deb ... - Unpacking dmsetup (2:1.02.185-2) ... - Selecting previously unselected package libdevmapper1.02.1:amd64. - Preparing to unpack .../02-libdevmapper1.02.1_2%3a1.02.185-2_amd64.deb ... - Unpacking libdevmapper1.02.1:amd64 (2:1.02.185-2) ... - Selecting previously unselected package libjson-c5:amd64. - Preparing to unpack .../03-libjson-c5_0.16-2_amd64.deb ... - Unpacking libjson-c5:amd64 (0.16-2) ... - Selecting previously unselected package libcryptsetup12:amd64. - Preparing to unpack .../04-libcryptsetup12_2%3a2.6.1-4~deb12u2_amd64.deb ... - Unpacking libcryptsetup12:amd64 (2:2.6.1-4~deb12u2) ... - Selecting previously unselected package libfdisk1:amd64. - Preparing to unpack .../05-libfdisk1_2.38.1-5+deb12u1_amd64.deb ... - Unpacking libfdisk1:amd64 (2.38.1-5+deb12u1) ... - Selecting previously unselected package libkmod2:amd64. - Preparing to unpack .../06-libkmod2_30+20221128-1_amd64.deb ... - Unpacking libkmod2:amd64 (30+20221128-1) ... - Selecting previously unselected package libapparmor1:amd64. - Preparing to unpack .../07-libapparmor1_3.0.8-3_amd64.deb ... - Unpacking libapparmor1:amd64 (3.0.8-3) ... - Selecting previously unselected package libip4tc2:amd64. - Preparing to unpack .../08-libip4tc2_1.8.9-2_amd64.deb ... - Unpacking libip4tc2:amd64 (1.8.9-2) ... - Selecting previously unselected package libsystemd-shared:amd64. - Preparing to unpack .../09-libsystemd-shared_252.30-1~deb12u2_amd64.deb ... - Unpacking libsystemd-shared:amd64 (252.30-1~deb12u2) ... - Selecting previously unselected package systemd. - Preparing to unpack .../10-systemd_252.30-1~deb12u2_amd64.deb ... - Unpacking systemd (252.30-1~deb12u2) ... - Setting up libargon2-1:amd64 (0~20171227-0.3+deb12u1) ... - Setting up libjson-c5:amd64 (0.16-2) ... - Setting up libfdisk1:amd64 (2.38.1-5+deb12u1) ... - Setting up libkmod2:amd64 (30+20221128-1) ... - Setting up libapparmor1:amd64 (3.0.8-3) ... - Setting up libip4tc2:amd64 (1.8.9-2) ... - Setting up libsystemd-shared:amd64 (252.30-1~deb12u2) ... - Setting up libdevmapper1.02.1:amd64 (2:1.02.185-2) ... - Setting up libcryptsetup12:amd64 (2:2.6.1-4~deb12u2) ... - Setting up systemd (252.30-1~deb12u2) ... - Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service. - Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target. - Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. - Initializing machine ID from random generator. - Creating group 'systemd-journal' with GID 999. - Creating group 'systemd-network' with GID 998. - Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. - Setting up dmsetup (2:1.02.185-2) ... - Selecting previously unselected package systemd-sysv. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19679 files and directories currently installed.) - Preparing to unpack .../0-systemd-sysv_252.30-1~deb12u2_amd64.deb ... - Unpacking systemd-sysv (252.30-1~deb12u2) ... - Selecting previously unselected package libdbus-1-3:amd64. - Preparing to unpack .../1-libdbus-1-3_1.14.10-1~deb12u1_amd64.deb ... - Unpacking libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... - Selecting previously unselected package dbus-bin. - Preparing to unpack .../2-dbus-bin_1.14.10-1~deb12u1_amd64.deb ... - Unpacking dbus-bin (1.14.10-1~deb12u1) ... - Selecting previously unselected package dbus-session-bus-common. - Preparing to unpack .../3-dbus-session-bus-common_1.14.10-1~deb12u1_all.deb ... - Unpacking dbus-session-bus-common (1.14.10-1~deb12u1) ... - Selecting previously unselected package dbus-daemon. - Preparing to unpack .../4-dbus-daemon_1.14.10-1~deb12u1_amd64.deb ... - Unpacking dbus-daemon (1.14.10-1~deb12u1) ... - Selecting previously unselected package dbus-system-bus-common. - Preparing to unpack .../5-dbus-system-bus-common_1.14.10-1~deb12u1_all.deb ... - Unpacking dbus-system-bus-common (1.14.10-1~deb12u1) ... - Selecting previously unselected package dbus. - Preparing to unpack .../6-dbus_1.14.10-1~deb12u1_amd64.deb ... - Unpacking dbus (1.14.10-1~deb12u1) ... - Selecting previously unselected package libpython3.11-minimal:amd64. - Preparing to unpack .../7-libpython3.11-minimal_3.11.2-6+deb12u3_amd64.deb ... - Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u3) ... - Selecting previously unselected package python3.11-minimal. - Preparing to unpack .../8-python3.11-minimal_3.11.2-6+deb12u3_amd64.deb ... - Unpacking python3.11-minimal (3.11.2-6+deb12u3) ... - Setting up libpython3.11-minimal:amd64 (3.11.2-6+deb12u3) ... - Setting up python3.11-minimal (3.11.2-6+deb12u3) ... - Selecting previously unselected package python3-minimal. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20077 files and directories currently installed.) - Preparing to unpack .../python3-minimal_3.11.2-1+b1_amd64.deb ... - Unpacking python3-minimal (3.11.2-1+b1) ... - Selecting previously unselected package media-types. - Preparing to unpack .../media-types_10.0.0_all.deb ... - Unpacking media-types (10.0.0) ... - Selecting previously unselected package libpython3.11-stdlib:amd64. - Preparing to unpack .../libpython3.11-stdlib_3.11.2-6+deb12u3_amd64.deb ... - Unpacking libpython3.11-stdlib:amd64 (3.11.2-6+deb12u3) ... - Selecting previously unselected package python3.11. - Preparing to unpack .../python3.11_3.11.2-6+deb12u3_amd64.deb ... - Unpacking python3.11 (3.11.2-6+deb12u3) ... - Selecting previously unselected package libpython3-stdlib:amd64. - Preparing to unpack .../libpython3-stdlib_3.11.2-1+b1_amd64.deb ... - Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... - Setting up python3-minimal (3.11.2-1+b1) ... - Selecting previously unselected package python3. - (Reading database ... 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Preparing to unpack .../008-libxml2_2.9.14+dfsg-1.3~deb12u1_amd64.deb ... - Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... - Selecting previously unselected package shared-mime-info. - Preparing to unpack .../009-shared-mime-info_2.2-1_amd64.deb ... - Unpacking shared-mime-info (2.2-1) ... - Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. - Preparing to unpack .../010-libgdk-pixbuf-2.0-0_2.42.10+dfsg-1+deb12u1_amd64.deb ... - Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+deb12u1) ... - Selecting previously unselected package gtk-update-icon-cache. - Preparing to unpack .../011-gtk-update-icon-cache_3.24.38-2~deb12u2_amd64.deb ... - Unpacking gtk-update-icon-cache (3.24.38-2~deb12u2) ... - Selecting previously unselected package adwaita-icon-theme. - Preparing to unpack .../012-adwaita-icon-theme_43-1_all.deb ... - Unpacking adwaita-icon-theme (43-1) ... - Selecting previously unselected package aglfn. - Preparing to unpack .../013-aglfn_1.7+git20191031.4036a9c-2_all.deb ... - 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Setting up libglib2.0-data (2.74.6-2+deb12u3) ... - Setting up libxcb-xinerama0:amd64 (1.15-1) ... - Setting up libpkgconf3:amd64 (1.8.1-1) ... - Setting up qttranslations5-l10n (5.15.8-2) ... - Setting up libepoxy0:amd64 (1.5.10-1) ... - Setting up libxfixes3:amd64 (1:6.0.0-2) ... - Setting up libxcb-sync1:amd64 (1.15-1) ... - Setting up fonts-liberation2 (2.1.5-1) ... - Setting up libpathplan4:amd64 (2.42.2-7+deb12u1) ... - Setting up aglfn (1.7+git20191031.4036a9c-2) ... - Setting up libavahi-common-data:amd64 (0.8-10) ... - Setting up libann0 (1.1.2+doc-9+b1) ... - Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... - Setting up libfribidi0:amd64 (1.0.8-2.1) ... - Setting up libxinerama1:amd64 (2:1.1.4-3) ... - Setting up systemd-timesyncd (252.30-1~deb12u2) ... - Creating group 'systemd-timesync' with GID 997. - Creating user 'systemd-timesync' (systemd Time Synchronization) with UID 997 and GID 997. - Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service → /lib/systemd/system/systemd-timesyncd.service. - 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Setting up libcairo-gobject2:amd64 (1.16.0-7) ... - Setting up libcdt5:amd64 (2.42.2-7+deb12u1) ... - Setting up libatk1.0-0:amd64 (2.46.0-5) ... - Setting up libcgraph6:amd64 (2.42.2-7+deb12u1) ... - Setting up libwayland-egl1:amd64 (1.21.0-1) ... - Setting up libcoordgen3:amd64 (3.0.1-1) ... - Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... - Setting up libboost-python1.74.0 (1.74.0+ds1-21) ... - Setting up libnlopt-dev:amd64 (2.7.1-5) ... - Setting up libdrm-common (2.4.114-1) ... - Setting up libelf1:amd64 (0.188-2.1) ... - Setting up libxcomposite1:amd64 (1:0.4.5-1) ... - Setting up libevdev2:amd64 (1.13.0+dfsg-1) ... - Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... - Setting up dbus-bin (1.14.10-1~deb12u1) ... - Setting up libgudev-1.0-0:amd64 (237-2) ... - Setting up libsvm3:amd64 (3.24+ds-6) ... - Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... - Setting up libwacom-common (2.6.0-1) ... - Setting up libxkbcommon0:amd64 (1.5.0-1) ... - Setting up libwayland-client0:amd64 (1.21.0-1) ... - Setting up automake (1:1.16.5-1.3) ... - update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode - Setting up gnuplot-data (5.4.4+dfsg1-2) ... - Setting up libgts-bin (0.7.6+darcs121130-5+b1) ... - Setting up python3.11 (3.11.2-6+deb12u3) ... - Setting up libice6:amd64 (2:1.0.10-1) ... - Setting up liblapack3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode - Setting up libpython3.11:amd64 (3.11.2-6+deb12u3) ... - Setting up libwacom9:amd64 (2.6.0-1) ... - Setting up libxtst6:amd64 (2:1.2.3-1.1) ... - Setting up librdkit1 (202209.3-1) ... - Setting up libxcursor1:amd64 (1:1.2.1-1) ... - Setting up libavahi-common3:amd64 (0.8-10) ... - Setting up python3 (3.11.2-1+b1) ... - running python rtupdate hooks for python3.11... - running python post-rtupdate hooks for python3.11... - Setting up dbus-daemon (1.14.10-1~deb12u1) ... - Setting up libatspi2.0-0:amd64 (2.46.0-5) ... - Setting up libwxbase3.2-1:amd64 (3.2.2+dfsg-2) ... - Setting up pkgconf:amd64 (1.8.1-1) ... - Setting up libinput-bin (1.22.1-1) ... - Setting up libatk-bridge2.0-0:amd64 (2.46.0-5) ... - Setting up libthai0:amd64 (0.1.29-1) ... - Setting up dbus (1.14.10-1~deb12u1) ... - invoke-rc.d: could not determine current runlevel - invoke-rc.d: policy-rc.d denied execution of start. - Setting up shared-mime-info (2.2-1) ... - Setting up libxkbcommon-x11-0:amd64 (1.5.0-1) ... - Setting up librdkit-dev (202209.3-1) ... - Setting up pkg-config:amd64 (1.8.1-1) ... - Setting up libqt5core5a:amd64 (5.15.8+dfsg-11+deb12u2) ... - Setting up libgvpr2:amd64 (2.42.2-7+deb12u1) ... - Setting up libdrm2:amd64 (2.4.114-1+b1) ... - Setting up libqt5dbus5:amd64 (5.15.8+dfsg-11+deb12u2) ... - Setting up libwayland-cursor0:amd64 (1.21.0-1) ... - Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... - Setting up libpam-systemd:amd64 (252.30-1~deb12u2) ... - Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+deb12u1) ... - Setting up libsm6:amd64 (2:1.2.3-1) ... - Setting up libavahi-client3:amd64 (0.8-10) ... - Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... - Setting up python3-pkg-resources (66.1.1-1) ... - Setting up libinput10:amd64 (1.22.1-1) ... - Setting up gtk-update-icon-cache (3.24.38-2~deb12u2) ... - Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... - Setting up libgbm1:amd64 (22.3.6-1+deb12u1) ... - Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... - Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... - Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... - Setting up libqt5network5:amd64 (5.15.8+dfsg-11+deb12u2) ... - Setting up dbus-user-session (1.14.10-1~deb12u1) ... - Setting up libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up adwaita-icon-theme (43-1) ... - update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode - Setting up libqt5qml5:amd64 (5.15.8+dfsg-3) ... - Setting up libnotify4:amd64 (0.8.1-1) ... - Setting up libxt6:amd64 (1:1.2.1-1.1) ... - Setting up python3-numpy (1:1.24.2-1+deb12u1) ... - Setting up libcups2:amd64 (2.4.2-3+deb12u7) ... - Setting up libgdk-pixbuf2.0-bin (2.42.10+dfsg-1+deb12u1) ... - Setting up libegl1:amd64 (1.6.0-1) ... - Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libxmu6:amd64 (2:1.1.3-3) ... - Setting up libqt5qmlmodels5:amd64 (5.15.8+dfsg-3) ... - Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up libglx0:amd64 (1.6.0-1) ... - Setting up dconf-service (0.40.0-4) ... - Setting up libxaw7:amd64 (2:1.0.14-1) ... - Setting up librsvg2-2:amd64 (2.54.7+dfsg-1~deb12u1) ... - Setting up libgl1:amd64 (1.6.0-1) ... - Setting up python3-rdkit (202209.3-1) ... - Setting up libgvc6 (2.42.2-7+deb12u1) ... - Setting up librsvg2-common:amd64 (2.54.7+dfsg-1~deb12u1) ... - Setting up graphviz (2.42.2-7+deb12u1) ... - Setting up dconf-gsettings-backend:amd64 (0.40.0-4) ... - Setting up libqt5gui5:amd64 (5.15.8+dfsg-11+deb12u2) ... - Setting up libqt5widgets5:amd64 (5.15.8+dfsg-11+deb12u2) ... - Setting up libqt5waylandclient5:amd64 (5.15.8-2) ... - Setting up libqt5printsupport5:amd64 (5.15.8+dfsg-11+deb12u2) ... - Setting up libqt5quick5:amd64 (5.15.8+dfsg-3) ... - Setting up libgtk-3-common (3.24.38-2~deb12u2) ... - Setting up gsettings-desktop-schemas (43.0-1) ... - Setting up libgtk-3-0:amd64 (3.24.38-2~deb12u2) ... - Setting up libqt5svg5:amd64 (5.15.8-3) ... - Setting up libgtk-3-bin (3.24.38-2~deb12u2) ... - Setting up qt5-gtk-platformtheme:amd64 (5.15.8+dfsg-11+deb12u2) ... - Setting up libqt5waylandcompositor5:amd64 (5.15.8-2) ... - Setting up at-spi2-core (2.46.0-5) ... - Setting up libwxgtk3.2-1:amd64 (3.2.2+dfsg-2) ... - Setting up qtwayland5:amd64 (5.15.8-2) ... - Setting up gnuplot-qt (5.4.4+dfsg1-2+b2) ... - update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode - Setting up libsvm-tools (3.24+ds-6) ... - Setting up gnuplot (5.4.4+dfsg1-2) ... - Processing triggers for systemd (252.30-1~deb12u2) ... - Processing triggers for libc-bin (2.36-9+deb12u8) ... - Processing triggers for libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+deb12u1) ... <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> Processing 2/105: Processing 3/105: Processing 4/105: Processing 5/105: -> installed base-bytes.base Processing 6/105: -> retrieved batteries.3.8.0 (cached) Processing 7/105: Processing 8/105: Processing 9/105: Processing 10/105: Processing 11/105: -> retrieved conf-python-3.9.0.0 (cached) Processing 12/105: -> retrieved conf-rdkit.1 (cached) Processing 13/105: Processing 14/105: Processing 15/105: Processing 16/105: [conf-autoconf: autoconf] Processing 17/105: [conf-autoconf: autoconf] [conf-libsvm-tools: bash] Processing 18/105: [conf-autoconf: autoconf] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] Processing 19/105: [conf-autoconf: autoconf] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] Processing 20/105: [conf-autoconf: autoconf] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] Processing 21/105: [conf-autoconf: autoconf] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> retrieved bst.7.1.0 (cached) Processing 22/105: [conf-autoconf: autoconf] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> retrieved camlp-streams.5.0.1 (cached) Processing 23/105: [conf-autoconf: autoconf] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] Processing 24/105: [camlp-streams: dune build] [conf-autoconf: autoconf] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> retrieved cpm.12.2.0 (cached) Processing 25/105: [camlp-streams: dune build] [conf-autoconf: autoconf] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] - autoconf (GNU Autoconf) 2.71 - Copyright (C) 2021 Free Software Foundation, Inc. - License GPLv3+/Autoconf: GNU GPL version 3 or later - <https://gnu.org/licenses/gpl.html>, <https://gnu.org/licenses/exceptions.html> - This is free software: you are free to change and redistribute it. - There is NO WARRANTY, to the extent permitted by law. - - Written by David J. MacKenzie and Akim Demaille. -> compiled conf-autoconf.0.2 Processing 25/105: [camlp-streams: dune build] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> installed conf-autoconf.0.2 Processing 26/105: [camlp-streams: dune build] [conf-libsvm-tools: bash] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] - usage: pkgconf [OPTIONS] [LIBRARIES] - - basic options: - - --help this message - --about print pkgconf version and license to stdout - --version print supported pkg-config version to stdout - --atleast-pkgconfig-version check whether or not pkgconf is compatible - with a specified pkg-config version - --errors-to-stdout print all errors on stdout instead of stderr - --print-errors ensure all errors are printed - --short-errors be less verbose about some errors - --silence-errors explicitly be silent about errors - --list-all list all known packages - --list-package-names list all known package names - --simulate simulate walking the calculated dependency graph - --no-cache do not cache already seen packages when - walking the dependency graph - --log-file=filename write an audit log to a specified file - --with-path=path adds a directory to the search path - --define-prefix override the prefix variable with one that is guessed based on - the location of the .pc file - --dont-define-prefix do not override the prefix variable under any circumstances - --prefix-variable=varname sets the name of the variable that pkgconf considers - to be the package prefix - --relocate=path relocates a path and exits (mostly for testsuite) - --dont-relocate-paths disables path relocation support - - cross-compilation personality support: - - --personality=triplet|filename sets the personality to 'triplet' or a file named 'filename' - --dump-personality dumps details concerning selected personality - - checking specific pkg-config database entries: - - --atleast-version require a specific version of a module - --exact-version require an exact version of a module - --max-version require a maximum version of a module - --exists check whether or not a module exists - --uninstalled check whether or not an uninstalled module will be used - --no-uninstalled never use uninstalled modules when satisfying dependencies - --no-provides do not use 'provides' rules to resolve dependencies - --maximum-traverse-depth maximum allowed depth for dependency graph - --static be more aggressive when computing dependency graph - (for static linking) - --shared use a simplified dependency graph (usually default) - --pure optimize a static dependency graph as if it were a normal - dependency graph - --env-only look only for package entries in PKG_CONFIG_PATH - --ignore-conflicts ignore 'conflicts' rules in modules - --validate validate specific .pc files for correctness - - querying specific pkg-config database fields: - - --define-variable=varname=value define variable 'varname' as 'value' - --variable=varname print specified variable entry to stdout - --cflags print required CFLAGS to stdout - --cflags-only-I print required include-dir CFLAGS to stdout - --cflags-only-other print required non-include-dir CFLAGS to stdout - --libs print required linker flags to stdout - --libs-only-L print required LDPATH linker flags to stdout - --libs-only-l print required LIBNAME linker flags to stdout - --libs-only-other print required other linker flags to stdout - --print-requires print required dependency frameworks to stdout - --print-requires-private print required dependency frameworks for static - linking to stdout - --print-provides print provided dependencies to stdout - --print-variables print all known variables in module to stdout - --digraph print entire dependency graph in graphviz 'dot' format - --keep-system-cflags keep -I/usr/include entries in cflags output - --keep-system-libs keep -L/lib:/lib/i386-linux-gnu:/lib/x86_64-linux-gnu:/lib/x86_64-linux-gnux32:/lib32:/libx32:/usr/lib:/usr/lib/i386-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnux32:/usr/lib32:/usr/libx32 entries in libs output - --path show the exact filenames for any matching .pc files - --modversion print the specified module's version to stdout - --internal-cflags do not filter 'internal' cflags from output - - filtering output: - - --msvc-syntax print translatable fragments in MSVC syntax - --fragment-filter=types filter output fragments to the specified types - - report bugs to <https://github.com/pkgconf/pkgconf/issues/new>. -> compiled conf-pkg-config.3 Processing 26/105: [camlp-streams: dune build] [conf-libsvm-tools: bash] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> installed conf-pkg-config.3 Processing 27/105: [camlp-streams: dune build] [conf-libsvm-tools: bash] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] Processing 28/105: [camlp-streams: dune build] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] - python-3 OK -> compiled conf-python-3.9.0.0 Processing 28/105: [camlp-streams: dune build] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh] [conf-which: which which] -> installed conf-python-3.9.0.0 Processing 29/105: [camlp-streams: dune build] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh] [conf-which: which which] - /usr/bin/which -> compiled conf-which.1 Processing 29/105: [camlp-streams: dune build] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh] -> installed conf-which.1 Processing 30/105: [camlp-streams: dune build] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh] Processing 31/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh] -> retrieved cpu.2.0.0 (cached) Processing 32/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh] Processing 33/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: sh] [cpu: autoconf] Processing 33/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: ./test] [cpu: autoconf] -> retrieved csexp.1.5.2 (cached) Processing 34/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: ./test] [cpu: autoconf] Processing 35/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] -> retrieved dokeysto.4.0.1 (cached) Processing 36/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-libsvm-tools: bash] [conf-nlopt: pkg-config nlopt] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] -> compiled conf-libsvm-tools.1.0.0 Processing 36/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-nlopt: pkg-config nlopt] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] -> installed conf-libsvm-tools.1.0.0 Processing 37/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-nlopt: pkg-config nlopt] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] -> compiled conf-nlopt.1 Processing 37/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] -> installed conf-nlopt.1 Processing 38/105: [camlp-streams: dune build] [conf-graphviz: which dot] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] - /usr/bin/dot -> compiled conf-graphviz.0.1 Processing 38/105: [camlp-streams: dune build] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] -> installed conf-graphviz.0.1 Processing 39/105: [camlp-streams: dune build] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] -> retrieved dolog.6.0.0 (cached) Processing 40/105: [camlp-streams: dune build] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] Processing 41/105: [camlp-streams: dune build] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] [dolog: dune build] - 2022.09.3 -> compiled conf-rdkit.1 Processing 41/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] -> installed conf-rdkit.1 Processing 42/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] -> retrieved extunix.0.4.2 (cached) Processing 43/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] -> retrieved line_oriented.1.3.0 (cached) Processing 44/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] -> retrieved minicli.5.0.2 (cached) Processing 45/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] Processing 46/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] -> retrieved nlopt.0.7.0 (cached) Processing 47/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] Processing 48/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] -> retrieved molenc.16.23.0 (cached) Processing 49/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] -> retrieved num.1.5-1 (cached) Processing 50/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: patch] applying num-in-findlib-dir.patch Processing 51/105: [camlp-streams: dune build] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: patch] - configure.ac:8: warning: The macro `AC_HEADER_STDC' is obsolete. - configure.ac:8: You should run autoupdate. - ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... - configure.ac:8: the top level Processing 51/105: [camlp-streams: dune build] [cpu: autoheader] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: patch] -> retrieved ocaml-compiler-libs.v0.12.4 (cached) Processing 52/105: [camlp-streams: dune build] [cpu: autoheader] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: patch] Processing 53/105: [camlp-streams: dune build] [cpu: autoheader] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: patch] [ocaml-compiler-libs: dune build] Processing 53/105: [camlp-streams: dune build] [cpu: autoheader] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> retrieved parany.14.0.1 (cached) Processing 54/105: [camlp-streams: dune build] [cpu: autoheader] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> retrieved ocamlgraph.2.1.0 (cached) Processing 55/105: [camlp-streams: dune build] [cpu: autoheader] [csexp: dune build] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> compiled csexp.1.5.2 Processing 55/105: [camlp-streams: dune build] [cpu: autoheader] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> installed csexp.1.5.2 Processing 56/105: [camlp-streams: dune build] [cpu: autoheader] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> retrieved ppx_derivers.1.2.1 (cached) Processing 57/105: [camlp-streams: dune build] [cpu: autoheader] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] Processing 58/105: [camlp-streams: dune build] [cpu: autoheader] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> retrieved pyml.20231101 (cached) Processing 59/105: [camlp-streams: dune build] [cpu: autoheader] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> compiled camlp-streams.5.0.1 Processing 59/105: [cpu: autoheader] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> installed camlp-streams.5.0.1 Processing 60/105: [cpu: autoheader] [dolog: dune build] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> compiled dolog.6.0.0 Processing 60/105: [cpu: autoheader] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> installed dolog.6.0.0 Processing 61/105: [cpu: autoheader] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> retrieved sexplib0.v0.17.0 (cached) Processing 62/105: [cpu: autoheader] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] Processing 63/105: [cpu: autoheader] [minicli: dune build] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [sexplib0: dune build] -> compiled minicli.5.0.2 Processing 63/105: [cpu: autoheader] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [sexplib0: dune build] -> installed minicli.5.0.2 Processing 64/105: [cpu: autoheader] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [sexplib0: dune build] -> retrieved stdcompat.19 (cached) Processing 65/105: [cpu: autoheader] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [sexplib0: dune build] Processing 66/105: [cpu: autoheader] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [sexplib0: dune build] [stdcompat: dune build] Processing 66/105: [cpu: ./configure] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [sexplib0: dune build] [stdcompat: dune build] -> retrieved ppxlib.0.33.0 (cached) Processing 67/105: [svmwrap.5.1.1: http] [cpu: ./configure] [nlopt: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [sexplib0: dune build] [stdcompat: dune build] -> compiled nlopt.0.7.0 Processing 67/105: [svmwrap.5.1.1: http] [cpu: ./configure] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [sexplib0: dune build] [stdcompat: dune build] -> installed nlopt.0.7.0 Processing 68/105: [svmwrap.5.1.1: http] [cpu: ./configure] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] [sexplib0: dune build] [stdcompat: dune build] -> compiled ppx_derivers.1.2.1 Processing 68/105: [svmwrap.5.1.1: http] [cpu: ./configure] [num: make opam-modern] [ocaml-compiler-libs: dune build] [sexplib0: dune build] [stdcompat: dune build] -> installed ppx_derivers.1.2.1 Processing 69/105: [svmwrap.5.1.1: http] [cpu: ./configure] [num: make opam-modern] [ocaml-compiler-libs: dune build] [sexplib0: dune build] [stdcompat: dune build] -> retrieved stdlib-shims.0.3.0 (cached) Processing 70/105: [svmwrap.5.1.1: http] [cpu: ./configure] [num: make opam-modern] [ocaml-compiler-libs: dune build] [sexplib0: dune build] [stdcompat: dune build] Processing 71/105: [svmwrap.5.1.1: http] [cpu: ./configure] [num: make opam-modern] [ocaml-compiler-libs: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] -> retrieved dune-configurator.3.16.0 (cached) Processing 72/105: [svmwrap.5.1.1: http] [cpu: ./configure] [dune-configurator: rm] [num: make opam-modern] [ocaml-compiler-libs: dune build] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] -> compiled ocaml-compiler-libs.v0.12.4 Processing 72/105: [svmwrap.5.1.1: http] [cpu: ./configure] [dune-configurator: rm] [num: make opam-modern] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] -> installed ocaml-compiler-libs.v0.12.4 Processing 73/105: [svmwrap.5.1.1: http] [cpu: ./configure] [dune-configurator: rm] [num: make opam-modern] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] - /usr/bin/make -C src all - make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/num.1.5-1/src' - ocamlc -ccopt -DBNG_ARCH_amd64 -c bng.c - ocamlc -ccopt -DBNG_ARCH_amd64 -c nat_stubs.c - ocamlmklib -oc nums bng.o nat_stubs.o - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml - ocamlmklib -o nums -oc nums -linkall int_misc.cmo nat.cmo big_int.cmo arith_flags.cmo ratio.cmo num.cmo arith_status.cmo - cp ../toplevel/num_top_printers.mli ../toplevel/num_top.mli ../toplevel/num_top_printers.ml ../toplevel/num_top.ml . - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -a -o num_top.cma num_top_printers.cmo num_top.cmo - echo 'version = "1.6~dev"' > META.top - cat META.num-top.in >> META.top - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml - ocamlmklib -o nums -oc nums -linkall int_misc.cmx nat.cmx big_int.cmx arith_flags.cmx ratio.cmx num.cmx arith_status.cmx - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -I . -shared -o nums.cmxs nums.cmxa - make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/num.1.5-1/src' - cp src/num-modern.install num.install -> compiled num.1.5-1 Processing 73/105: [svmwrap.5.1.1: http] [cpu: ./configure] [dune-configurator: rm] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] -> installed num.1.5-1 Processing 74/105: [svmwrap.5.1.1: http] [cpu: ./configure] [dune-configurator: rm] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] Processing 75/105: [svmwrap.5.1.1: http] [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [sexplib0: dune build] [stdcompat: dune build] [stdlib-shims: dune build] -> compiled sexplib0.v0.17.0 Processing 75/105: [svmwrap.5.1.1: http] [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [stdcompat: dune build] [stdlib-shims: dune build] -> installed sexplib0.v0.17.0 Processing 76/105: [svmwrap.5.1.1: http] [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [stdcompat: dune build] [stdlib-shims: dune build] - checking for ocamlc... ocamlc - OCaml version is 5.1.1 - OCaml library path is /home/opam/.opam/5.1/lib/ocaml - checking for ocamlopt... ocamlopt - checking for ocamlc.opt... ocamlc.opt - checking for ocamlopt.opt... ocamlopt.opt - checking for dynlink.cmxa... no - checking for ocaml... ocaml - checking for ocamldep... ocamldep - checking for ocamlmktop... ocamlmktop - checking for ocamlmklib... ocamlmklib - checking for ocamldoc... ocamldoc - checking for ocamlbuild... no - checking for gcc... gcc - checking whether the C compiler works... yes - checking for C compiler default output file name... a.out - checking for suffix of executables... - checking whether we are cross compiling... no - checking for suffix of object files... o - checking whether the compiler supports GNU C... yes - checking whether gcc accepts -g... yes - checking for gcc option to enable C11 features... none needed - checking for stdio.h... yes - checking for stdlib.h... yes - checking for string.h... yes - checking for inttypes.h... yes - checking for stdint.h... yes - checking for strings.h... yes - checking for sys/stat.h... yes - checking for sys/types.h... yes - checking for unistd.h... yes - checking for grep that handles long lines and -e... /usr/bin/grep - checking for egrep... /usr/bin/grep -E - checking for sched.h... yes - checking for gcc options needed to detect all undeclared functions... none needed - checking whether sched_setaffinity is declared... yes - checking for mach/thread_policy.h... no - checking whether thread_policy_set is declared... no - configure: creating ./config.status - config.status: creating src/config.h Processing 76/105: [svmwrap.5.1.1: http] [batteries: dune build] [cpu: dune build] [dune-configurator: rm] [stdcompat: dune build] [stdlib-shims: dune build] Processing 76/105: [batteries: dune build] [cpu: dune build] [dune-configurator: rm] [stdcompat: dune build] [stdlib-shims: dune build] -> retrieved vector3.1.0.0 (cached) Processing 77/105: [batteries: dune build] [cpu: dune build] [dune-configurator: rm] [stdcompat: dune build] [stdlib-shims: dune build] [vector3: dune build] -> compiled stdlib-shims.0.3.0 Processing 77/105: [batteries: dune build] [cpu: dune build] [dune-configurator: rm] [stdcompat: dune build] [vector3: dune build] -> installed stdlib-shims.0.3.0 Processing 78/105: [batteries: dune build] [cpu: dune build] [dune-configurator: rm] [stdcompat: dune build] [vector3: dune build] Processing 79/105: [batteries: dune build] [cpu: dune build] [dune-configurator: rm] [ocamlgraph: dune build] [stdcompat: dune build] [vector3: dune build] Processing 80/105: [batteries: dune build] [cpu: dune build] [dune-configurator: rm] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] [vector3: dune build] -> retrieved svmwrap.5.1.1 (https://github.com/UnixJunkie/svmwrap/archive/v5.1.1.tar.gz) Processing 80/105: [batteries: dune build] [cpu: dune build] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] [vector3: dune build] -> compiled vector3.1.0.0 Processing 80/105: [batteries: dune build] [cpu: dune build] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] -> installed vector3.1.0.0 Processing 81/105: [batteries: dune build] [cpu: dune build] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] -> compiled cpu.2.0.0 Processing 81/105: [batteries: dune build] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] -> installed cpu.2.0.0 Processing 82/105: [batteries: dune build] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] Processing 83/105: [batteries: dune build] [dune-configurator: dune build] [ocamlgraph: dune build] [parany: dune build] [ppxlib: dune build] [stdcompat: dune build] -> compiled parany.14.0.1 Processing 83/105: [batteries: dune build] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] -> installed parany.14.0.1 Processing 84/105: [batteries: dune build] [dune-configurator: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] -> compiled dune-configurator.3.16.0 Processing 84/105: [batteries: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] -> installed dune-configurator.3.16.0 Processing 85/105: [batteries: dune build] [ocamlgraph: dune build] [ppxlib: dune build] [stdcompat: dune build] -> compiled ocamlgraph.2.1.0 Processing 85/105: [batteries: dune build] [ppxlib: dune build] [stdcompat: dune build] -> installed ocamlgraph.2.1.0 Processing 86/105: [batteries: dune build] [ppxlib: dune build] [stdcompat: dune build] -> compiled batteries.3.8.0 Processing 86/105: [ppxlib: dune build] [stdcompat: dune build] -> installed batteries.3.8.0 Processing 87/105: [ppxlib: dune build] [stdcompat: dune build] Processing 88/105: [bst: dune build] [ppxlib: dune build] [stdcompat: dune build] Processing 89/105: [bst: dune build] [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build] Processing 90/105: [bst: dune build] [cpm: dune build] [line_oriented: dune build] [ppxlib: dune build] [stdcompat: dune build] -> compiled line_oriented.1.3.0 Processing 90/105: [bst: dune build] [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build] -> installed line_oriented.1.3.0 Processing 91/105: [bst: dune build] [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build] -> compiled bst.7.1.0 Processing 91/105: [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build] -> installed bst.7.1.0 Processing 92/105: [cpm: dune build] [ppxlib: dune build] [stdcompat: dune build] -> compiled cpm.12.2.0 Processing 92/105: [ppxlib: dune build] [stdcompat: dune build] -> installed cpm.12.2.0 Processing 93/105: [ppxlib: dune build] [stdcompat: dune build] - (cd _build/default && ./configure) - checking for a BSD-compatible install... /usr/bin/install -c - checking whether build environment is sane... yes - checking for a race-free mkdir -p... /usr/bin/mkdir -p - checking for gawk... no - checking for mawk... mawk - checking whether make sets $(MAKE)... yes - checking whether make supports nested variables... yes - checking for ocaml... ocaml - checking for ocamlc.opt... ocamlc.opt - checking OCaml version... 5.1.1 - checking for ocamlfind... ocamlfind - checking for ocamlfind package result... no - checking for ocamlfind package seq... no - checking for ocamlfind package uchar... no - checking whether make supports the include directive... yes (GNU style) - checking for gcc... gcc - checking whether the C compiler works... yes - checking for C compiler default output file name... a.out - checking for suffix of executables... - checking whether we are cross compiling... no - checking for suffix of object files... o - checking whether the compiler supports GNU C... yes - checking whether gcc accepts -g... yes - checking for gcc option to enable C11 features... none needed - checking whether gcc understands -c and -o together... yes - checking dependency style of gcc... none - checking for stdio.h... yes - checking for stdlib.h... yes - checking for string.h... yes - checking for inttypes.h... yes - checking for stdint.h... yes - checking for strings.h... yes - checking for sys/stat.h... yes - checking for sys/types.h... yes - checking for unistd.h... yes - checking whether byte ordering is bigendian... no - checking OCaml target OS type... Unix - checking for flambda2... false - checking that generated files are newer than configure... done - configure: creating ./config.status - config.status: creating META - config.status: creating Makefile - config.status: creating stdcompat__hashtbl_ext.mli - config.status: creating stdcompat__hashtbl_ext.ml - config.status: creating stdcompat__init.mli - config.status: creating stdcompat__init.ml - config.status: creating stdcompat__root.mli - config.status: creating stdcompat__root.ml - config.status: creating stdcompat__tools.mli - config.status: creating stdcompat__tools.ml - config.status: creating stdcompat__native.ml_byte - config.status: creating stdcompat__native.ml_native - config.status: creating stdcompat_tests.ml - config.status: creating stdcompat.h - config.status: creating stdcompat__stubs.c - config.status: creating stdcompat__pervasives_s.mli - config.status: creating stdcompat__arg_s.mli - config.status: creating stdcompat__array_s.mli - config.status: creating stdcompat__arrayLabels_s.mli - config.status: creating stdcompat__atomic_s.mli - config.status: creating stdcompat__bool_s.mli - config.status: creating stdcompat__buffer_s.mli - config.status: creating stdcompat__bytes_s.mli - config.status: creating stdcompat__bytesLabels_s.mli - config.status: creating stdcompat__char_s.mli - config.status: creating stdcompat__digest_s.mli - config.status: creating stdcompat__either_s.mli - config.status: creating stdcompat__ephemeron_s.mli - config.status: creating stdcompat__filename_s.mli - config.status: creating stdcompat__float_s.mli - config.status: creating stdcompat__format_s.mli - config.status: creating stdcompat__fun_s.mli - config.status: creating stdcompat__hashtbl_s.mli - config.status: creating stdcompat__in_channel_s.mli - config.status: creating stdcompat__int_s.mli - config.status: creating stdcompat__int32_s.mli - config.status: creating stdcompat__int64_s.mli - config.status: creating stdcompat__lazy_s.mli - config.status: creating stdcompat__lexing_s.mli - config.status: creating stdcompat__list_s.mli - config.status: creating stdcompat__listLabels_s.mli - config.status: creating stdcompat__map_s.mli - config.status: creating stdcompat__moreLabels_s.mli - config.status: creating stdcompat__nativeint_s.mli - config.status: creating stdcompat__option_s.mli - config.status: creating stdcompat__out_channel_s.mli - config.status: creating stdcompat__printexc_s.mli - config.status: creating stdcompat__printf_s.mli - config.status: creating stdcompat__queue_s.mli - config.status: creating stdcompat__random_s.mli - config.status: creating stdcompat__result_s.mli - config.status: creating stdcompat__seq_s.mli - config.status: creating stdcompat__set_s.mli - config.status: creating stdcompat__stack_s.mli - config.status: creating stdcompat__string_s.mli - config.status: creating stdcompat__stringLabels_s.mli - config.status: creating stdcompat__sys_s.mli - config.status: creating stdcompat__uchar_s.mli - config.status: creating stdcompat__weak_s.mli - config.status: creating stdcompat__unit_s.mli - config.status: creating stdcompat__stdlib_s.mli - config.status: creating stdcompat__pervasives_s.ml - config.status: creating stdcompat__arg_s.ml - config.status: creating stdcompat__array_s.ml - config.status: creating stdcompat__arrayLabels_s.ml - config.status: creating stdcompat__atomic_s.ml - config.status: creating stdcompat__bool_s.ml - config.status: creating stdcompat__buffer_s.ml - config.status: creating stdcompat__bytes_s.ml - config.status: creating stdcompat__bytesLabels_s.ml - config.status: creating stdcompat__char_s.ml - config.status: creating stdcompat__digest_s.ml - config.status: creating stdcompat__either_s.ml - config.status: creating stdcompat__ephemeron_s.ml - config.status: creating stdcompat__filename_s.ml - config.status: creating stdcompat__float_s.ml - config.status: creating stdcompat__format_s.ml - config.status: creating stdcompat__fun_s.ml - config.status: creating stdcompat__hashtbl_s.ml - config.status: creating stdcompat__int_s.ml - config.status: creating stdcompat__int32_s.ml - config.status: creating stdcompat__int64_s.ml - config.status: creating stdcompat__lazy_s.ml - config.status: creating stdcompat__lexing_s.ml - config.status: creating stdcompat__list_s.ml - config.status: creating stdcompat__listLabels_s.ml - config.status: creating stdcompat__map_s.ml - config.status: creating stdcompat__moreLabels_s.ml - config.status: creating stdcompat__nativeint_s.ml - config.status: creating stdcompat__option_s.ml - config.status: creating stdcompat__printexc_s.ml - config.status: creating stdcompat__printf_s.ml - config.status: creating stdcompat__queue_s.ml - config.status: creating stdcompat__random_s.ml - config.status: creating stdcompat__result_s.ml - config.status: creating stdcompat__seq_s.ml - config.status: creating stdcompat__set_s.ml - config.status: creating stdcompat__stack_s.ml - config.status: creating stdcompat__stdlib_s.ml - config.status: creating stdcompat__string_s.ml - config.status: creating stdcompat__stringLabels_s.ml - config.status: creating stdcompat__sys_s.ml - config.status: creating stdcompat__uchar_s.ml - config.status: creating stdcompat__weak_s.ml - config.status: creating stdcompat__in_channel_s.ml - config.status: creating stdcompat__out_channel_s.ml - config.status: creating stdcompat__unit_s.ml - config.status: creating stdcompat__pervasives.ml - config.status: creating stdcompat__arg.ml - config.status: creating stdcompat__array.ml - config.status: creating stdcompat__arrayLabels.ml - config.status: creating stdcompat__atomic.ml - config.status: creating stdcompat__bool.ml - config.status: creating stdcompat__buffer.ml - config.status: creating stdcompat__bytes.ml - config.status: creating stdcompat__bytesLabels.ml - config.status: creating stdcompat__char.ml - config.status: creating stdcompat__digest.ml - config.status: creating stdcompat__either.ml - config.status: creating stdcompat__ephemeron.ml - config.status: creating stdcompat__filename.ml - config.status: creating stdcompat__float.ml - config.status: creating stdcompat__format.ml - config.status: creating stdcompat__fun.ml - config.status: creating stdcompat__hashtbl.ml - config.status: creating stdcompat__int.ml - config.status: creating stdcompat__int32.ml - config.status: creating stdcompat__int64.ml - config.status: creating stdcompat__lazy.ml - config.status: creating stdcompat__lexing.ml - config.status: creating stdcompat__list.ml - config.status: creating stdcompat__listLabels.ml - config.status: creating stdcompat__map.ml - config.status: creating stdcompat__moreLabels.ml - config.status: creating stdcompat__nativeint.ml - config.status: creating stdcompat__option.ml - config.status: creating stdcompat__printexc.ml - config.status: creating stdcompat__printf.ml - config.status: creating stdcompat__queue.ml - config.status: creating stdcompat__random.ml - config.status: creating stdcompat__result.ml - config.status: creating stdcompat__seq.ml - config.status: creating stdcompat__set.ml - config.status: creating stdcompat__stack.ml - config.status: creating stdcompat__stdlib.ml - config.status: creating stdcompat__string.ml - config.status: creating stdcompat__stringLabels.ml - config.status: creating stdcompat__sys.ml - config.status: creating stdcompat__uchar.ml - config.status: creating stdcompat__weak.ml - config.status: creating stdcompat__in_channel.ml - config.status: creating stdcompat__out_channel.ml - config.status: creating stdcompat__unit.ml - config.status: creating stdcompat__pervasives.mli - config.status: creating stdcompat__arg.mli - config.status: creating stdcompat__array.mli - config.status: creating stdcompat__arrayLabels.mli - config.status: creating stdcompat__atomic.mli - config.status: creating stdcompat__bool.mli - config.status: creating stdcompat__buffer.mli - config.status: creating stdcompat__bytes.mli - config.status: creating stdcompat__bytesLabels.mli - config.status: creating stdcompat__char.mli - config.status: creating stdcompat__digest.mli - config.status: creating stdcompat__either.mli - config.status: creating stdcompat__ephemeron.mli - config.status: creating stdcompat__filename.mli - config.status: creating stdcompat__float.mli - config.status: creating stdcompat__format.mli - config.status: creating stdcompat__fun.mli - config.status: creating stdcompat__hashtbl.mli - config.status: creating stdcompat__int.mli - config.status: creating stdcompat__int32.mli - config.status: creating stdcompat__int64.mli - config.status: creating stdcompat__lazy.mli - config.status: creating stdcompat__lexing.mli - config.status: creating stdcompat__list.mli - config.status: creating stdcompat__listLabels.mli - config.status: creating stdcompat__map.mli - config.status: creating stdcompat__moreLabels.mli - config.status: creating stdcompat__nativeint.mli - config.status: creating stdcompat__option.mli - config.status: creating stdcompat__printexc.mli - config.status: creating stdcompat__printf.mli - config.status: creating stdcompat__queue.mli - config.status: creating stdcompat__random.mli - config.status: creating stdcompat__result.mli - config.status: creating stdcompat__seq.mli - config.status: creating stdcompat__set.mli - config.status: creating stdcompat__stack.mli - config.status: creating stdcompat__stdlib.mli - config.status: creating stdcompat__string.mli - config.status: creating stdcompat__stringLabels.mli - config.status: creating stdcompat__sys.mli - config.status: creating stdcompat__uchar.mli - config.status: creating stdcompat__weak.mli - config.status: creating stdcompat__in_channel.mli - config.status: creating stdcompat__out_channel.mli - config.status: creating stdcompat__unit.mli - config.status: creating stdcompat.mli - config.status: creating stdcompat.ml - config.status: creating config.h - config.status: executing depfiles commands - configure: OCaml version is 5.1.1 - configure: Obj.magic will be used in redefinition when possible - (add --disable-magic for pure redefinitions). -> compiled stdcompat.19 Processing 93/105: [ppxlib: dune build] -> installed stdcompat.19 Processing 94/105: [ppxlib: dune build] Processing 95/105: [ppxlib: dune build] [pyml: dune build] -> compiled pyml.20231101 Processing 95/105: [ppxlib: dune build] -> installed pyml.20231101 Processing 96/105: [ppxlib: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "ppxlib" "-j" "39" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ppxlib.0.33.0) -> compiled ppxlib.0.33.0 -> installed ppxlib.0.33.0 Processing 98/105: [extunix: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "extunix" "-j" "39" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/extunix.0.4.2) - (cd _build/default/src && ../discover/discover.exe) - checking EVENTFD.............ok - checking ATFILE..............ok - checking DIRFD...............ok - checking STATVFS.............ok - checking FSTATVFS............ok - checking SIOCGIFCONF.........ok - checking IFADDRS.............ok - checking INET_NTOA...........ok - checking INET_NTOP...........ok - checking UNAME...............ok - checking FADVISE.............ok - checking FALLOCATE...........ok - checking TTY_IOCTL...........ok - checking TTYNAME.............ok - checking CTERMID.............ok - checking GETTID..............ok - checking PGID................ok - checking SETREUID............ok - checking FSYNC...............ok - checking FDATASYNC...........ok - checking SYNC................ok - checking SYNCFS..............ok - checking REALPATH............ok - checking SIGNALFD............ok - checking PTRACE..............ok - checking RESOURCE............ok - checking MLOCKALL............ok - checking STRPTIME............ok - checking STRTIME.............ok - checking TIMEZONE............ok - checking TIMEGM..............ok - checking PTS.................ok - checking FCNTL...............ok - checking TCPGRP..............ok - checking EXECINFO............ok - checking SETENV..............ok - checking CLEARENV............ok - checking MKDTEMP.............ok - checking MALLOC_INFO.........ok - checking MALLOC_STATS........ok - checking MEMALIGN............ok - checking ENDIAN..............ok - checking READ_CREDENTIALS....ok - checking FEXECVE.............ok - checking SENDMSG.............ok - checking PREAD...............ok - checking PWRITE..............ok - checking READ................ok - checking WRITE...............ok - checking MKSTEMPS............ok - checking MKOSTEMPS...........ok - checking SETRESUID...........ok - checking SYSCONF.............ok - checking SPLICE..............ok - checking TEE.................ok - checking VMSPLICE............ok - checking SOCKOPT.............ok - checking TCP_KEEPIDLE........ok - checking TCP_KEEPCNT.........ok - checking TCP_KEEPINTVL.......ok - checking SO_REUSEPORT........ok - checking POLL................ok - checking SYSINFO.............ok - checking MCHECK..............ok - checking MOUNT...............ok - checking UNSHARE.............ok - checking CHROOT..............ok - checking SYSLOG..............ok -> compiled extunix.0.4.2 -> installed extunix.0.4.2 Processing 100/105: [dokeysto: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "dokeysto" "-j" "39" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dokeysto.4.0.1) -> compiled dokeysto.4.0.1 -> installed dokeysto.4.0.1 Processing 102/105: [molenc: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "molenc" "-j" "39" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) -> compiled molenc.16.23.0 Processing 103/105: [molenc: cp] + /usr/bin/cp "bin/molenc_diam.py" "/home/opam/.opam/5.1/bin/molenc_diam.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_ph4.py" "/home/opam/.opam/5.1/bin/molenc_ph4.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc.sh" "/home/opam/.opam/5.1/bin/molenc.sh" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_ligprep.sh" "/home/opam/.opam/5.1/bin/molenc_ligprep.sh" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_common.py" "/home/opam/.opam/5.1/bin/molenc_common.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_lean.py" "/home/opam/.opam/5.1/bin/molenc_lean.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_lizard.py" "/home/opam/.opam/5.1/bin/molenc_lizard.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_scan.py" "/home/opam/.opam/5.1/bin/molenc_scan.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_scan.sh" "/home/opam/.opam/5.1/bin/molenc_scan.sh" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_type_atoms.py" "/home/opam/.opam/5.1/bin/molenc_type_atoms.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/smi2png.py" "/home/opam/.opam/5.1/bin/molenc_smi2png.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_smisur.py" "/home/opam/.opam/5.1/bin/molenc_smisur.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_panascan.py" "/home/opam/.opam/5.1/bin/molenc_panascan.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_scaffold.py" "/home/opam/.opam/5.1/bin/molenc_scaffold.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_deepsmi.py" "/home/opam/.opam/5.1/bin/molenc_deepsmi.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_lead.py" "/home/opam/.opam/5.1/bin/molenc_lead.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_drug.py" "/home/opam/.opam/5.1/bin/molenc_drug.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_smi2cansmi.py" "/home/opam/.opam/5.1/bin/molenc_smi2cansmi.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_std.py" "/home/opam/.opam/5.1/bin/molenc_std.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_padel.py" "/home/opam/.opam/5.1/bin/molenc_padel.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_rotbond.py" "/home/opam/.opam/5.1/bin/molenc_rotbond.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_mview.py" "/home/opam/.opam/5.1/bin/molenc_mview.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_HA.py" "/home/opam/.opam/5.1/bin/molenc_HA.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_sdf2smi.py" "/home/opam/.opam/5.1/bin/molenc_sdf2smi.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) + /usr/bin/cp "bin/molenc_atoms_filter.py" "/home/opam/.opam/5.1/bin/molenc_atoms_filter.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/molenc.16.23.0) -> installed molenc.16.23.0 Processing 104/105: [svmwrap: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "svmwrap" "-j" "39" (CWD=/home/opam/.opam/5.1/.opam-switch/build/svmwrap.5.1.1) -> compiled svmwrap.5.1.1 -> installed svmwrap.5.1.1 Done. # Run eval $(opam env) to update the current shell environment 2024-09-12 13:31.32 ---> saved as "7c8f1e3f6802aa5f5ab5ecccb549f887f6c38b05288755dc371608838a6dc995" /home/opam: (run (shell "opam exec -- ~/voodoo-prep -u svmwrap:fc18dadffbd65f2aa59dd6b1ef25e803,nlopt:91563736edbe94b82f78dd25fe1f4cfe")) 2024-09-12 13:31.34 ---> saved as "e72525c3c14525cf70589c98776452c1fe5d08b33f43c50870c30b5d2259d8e3" /home/opam: (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.055928') && (for DATA in prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0,nlopt.0.7.0-91563736edbe94b82f78dd25fe1f4cfe,nlopt.0.7.0 prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1,svmwrap.5.1.1-fc18dadffbd65f2aa59dd6b1ef25e803,svmwrap.5.1.1; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0,nlopt.0.7.0-91563736edbe94b82f78dd25fe1f4cfe,nlopt.0.7.0 prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1,svmwrap.5.1.1-fc18dadffbd65f2aa59dd6b1ef25e803,svmwrap.5.1.1; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0,nlopt.0.7.0-91563736edbe94b82f78dd25fe1f4cfe,nlopt.0.7.0 prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1,svmwrap.5.1.1-fc18dadffbd65f2aa59dd6b1ef25e803,svmwrap.5.1.1; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) 0.055928 prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/doc/ prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/doc/nlopt/ prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/doc/nlopt/LICENSE prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/doc/nlopt/README.md prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/lib/ prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/lib/nlopt/ prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/lib/nlopt/nlopt.ocamlobjinfo prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/lib/nlopt/META prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/lib/nlopt/dune-package prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/lib/nlopt/nlopt.cmi prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/lib/nlopt/nlopt.cmt prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/lib/nlopt/nlopt.cmti prep/universes/91563736edbe94b82f78dd25fe1f4cfe/nlopt/0.7.0/opam prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1/doc/ prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1/doc/svmwrap/ prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1/doc/svmwrap/LICENSE prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1/doc/svmwrap/README.md prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1/lib/ prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1/lib/svmwrap/ prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1/lib/svmwrap/META prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1/lib/svmwrap/dune-package prep/universes/fc18dadffbd65f2aa59dd6b1ef25e803/svmwrap/5.1.1/opam Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. HASHES:nlopt.0.7.0-91563736edbe94b82f78dd25fe1f4cfe:2ad4b18ef7e388982c1919ebe3ddf0ddea26c8938cbdd13dcabd2aaeb85101ec HASHES:svmwrap.5.1.1-fc18dadffbd65f2aa59dd6b1ef25e803:11e1b240ce5572024d23a2015fcf576172803d091454d3f7c053f1cfd618274b 2024-09-12 13:31.35 ---> saved as "3505bb2a6f511731c5cb19e0a185bc3121afb1be7786cc8c76908cc66b1e7ac6" Job succeeded 2024-09-12 13:39.07: svmwrap.5.1.1-fc18dadffbd65f2aa59dd6b1ef25e803 -> 11e1b240ce5572024d23a2015fcf576172803d091454d3f7c053f1cfd618274b 2024-09-12 13:39.07: nlopt.0.7.0-91563736edbe94b82f78dd25fe1f4cfe -> 2ad4b18ef7e388982c1919ebe3ddf0ddea26c8938cbdd13dcabd2aaeb85101ec 2024-09-12 13:39.07: Job succeeded