Build:
- 0
2024-05-17 13:37.55: New job: Voodoo prep ocaml-r.0.3.1; 8f359c467d8d438eda2602ca90c4cf22 2024-05-17 13:37.55: Connecting to build cluster… 2024-05-17 13:37.55: Waiting for resource in pool OCluster 2024-05-17 13:39.39: Waiting for worker… 2024-05-17 13:53.48: Got resource from pool OCluster 2024-05-17 13:53.48: Using cache hint "docs-universe-prep-5.1.1" To reproduce locally: cat > prep.spec <<'END-OF-SPEC' ((build tools ((from ocaml/opam:debian-12-ocaml-5.1@sha256:57d068fb00b19df125347cfd89eefad2653b2fc4b5336b30d766293a6f8414e6) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")))) (from ocaml/opam:debian-12-ocaml-5.1@sha256:57d068fb00b19df125347cfd89eefad2653b2fc4b5336b30d766293a6f8414e6) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (shell "sudo mkdir /src")) (copy (src packages) (dst /src/packages)) (copy (src repo) (dst /src/repo)) (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) (run (shell "opam repo remove default && opam repo add opam /src")) (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.15.2")) (env DUNE_CACHE enabled) (env DUNE_CACHE_TRANSPORT direct) (env DUNE_CACHE_DUPLICATION copy) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy ocaml-r.0.3.1 stdio.v0.16.0 sexplib0.v0.16.0 dune-configurator.3.15.2 dune.3.15.2 csexp.1.5.2 conf-r-mathlib.1 conf-r.1.0.0 conf-pkg-config.3 conf-bash.1 base.v0.16.3 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) (run (shell "opam exec -- ~/voodoo-prep -u ocaml-r:8f359c467d8d438eda2602ca90c4cf22")) (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.357885') && (for DATA in prep/universes/8f359c467d8d438eda2602ca90c4cf22/ocaml-r/0.3.1,ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22,ocaml-r.0.3.1; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/8f359c467d8d438eda2602ca90c4cf22/ocaml-r/0.3.1,ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22,ocaml-r.0.3.1; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/8f359c467d8d438eda2602ca90c4cf22/ocaml-r/0.3.1,ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22,ocaml-r.0.3.1; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) ) END-OF-SPEC ocluster-client submit-obuilder https://github.com/ocaml/opam-repository.git 8f9c09d65d773a0300d31a7b29248d1c07cb34d8 --local-file prep.spec \ --pool linux-x86_64 --connect ocluster-submission.cap --cache-hint docs-universe-prep-5.1.1 \ --secret ssh_privkey:id_rsa --secret ssh_pubkey:id_rsa.pub--secret ssh_config:ssh_config 2024-05-17 13:53.48: RETRYING: 2024-05-17/133755-voodoo-prep-f9fe73 Number of retries: 0 (retriable error condition) Building on x86-bm-c10.sw.ocaml.org All commits already cached Updating files: 55% (18569/33696) Updating files: 56% (18870/33696) Updating files: 57% (19207/33696) Updating files: 58% (19544/33696) Updating files: 59% (19881/33696) Updating files: 60% (20218/33696) Updating files: 61% (20555/33696) Updating files: 62% (20892/33696) Updating files: 63% (21229/33696) Updating files: 64% (21566/33696) Updating files: 65% (21903/33696) Updating files: 66% (22240/33696) Updating files: 67% (22577/33696) Updating files: 68% (22914/33696) Updating files: 69% (23251/33696) Updating files: 70% (23588/33696) Updating files: 71% (23925/33696) Updating files: 72% (24262/33696) Updating files: 73% (24599/33696) Updating files: 74% (24936/33696) Updating files: 75% (25272/33696) Updating files: 76% (25609/33696) Updating files: 77% (25946/33696) Updating files: 78% (26283/33696) Updating files: 79% (26620/33696) Updating files: 80% (26957/33696) Updating files: 81% (27294/33696) Updating files: 82% (27631/33696) Updating files: 83% (27968/33696) Updating files: 84% (28305/33696) Updating files: 85% (28642/33696) Updating files: 86% (28979/33696) Updating files: 87% (29316/33696) Updating files: 88% (29653/33696) Updating files: 89% (29990/33696) Updating files: 90% (30327/33696) Updating files: 91% (30664/33696) Updating files: 92% (31001/33696) Updating files: 93% (31338/33696) Updating files: 94% (31675/33696) Updating files: 95% (32012/33696) Updating files: 96% (32349/33696) Updating files: 97% (32686/33696) Updating files: 98% (33023/33696) Updating files: 99% (33360/33696) Updating files: 100% (33696/33696) Updating files: 100% (33696/33696), done. HEAD is now at 8f9c09d65d `ocaml-r` version bounds (build "tools" …) (from ocaml/opam:debian-12-ocaml-5.1@sha256:57d068fb00b19df125347cfd89eefad2653b2fc4b5336b30d766293a6f8414e6) 2024-05-17 13:50.06 ---> using "21c8a5b61b5cb4edf66f4190bf5c4b0e52bef7327a05c34de6f8342edd793c57" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-05-17 13:50.06 ---> using "46e86ad6c91a7732e8a7ff32712bee397c6e462e5217d61d9842ae07d5bb5e2c" from cache /home/opam: (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [156 kB] Fetched 259 kB in 0s (989 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libpkgconf3 pkgconf pkgconf-bin Suggested packages: m4-doc The following NEW packages will be installed: libpkgconf3 m4 pkg-config pkgconf pkgconf-bin 0 upgraded, 5 newly installed, 0 to remove and 1 not upgraded. Need to get 392 kB of archives. After this operation, 969 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 392 kB in 0s (14.9 MB/s) Selecting previously unselected package libpkgconf3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18766 files and directories currently installed.) Preparing to unpack .../libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../pkgconf_1.8.1-1_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Setting up m4 (1.4.19-3) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... 2024-05-17 13:50.06 ---> using "efd532a61c81b7400895116d75dd48de3e2df13e2c011e2b49ee47c397bdcfe7" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 This will pin the following packages: voodoo-prep, voodoo-lib, voodoo-gen, voodoo-do. Continue? [Y/n] y Package voodoo-prep does not exist, create as a NEW package? [Y/n] y [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-prep is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-lib does not exist, create as a NEW package? [Y/n] y [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-lib is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-gen does not exist, create as a NEW package? [Y/n] y [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-gen is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-do does not exist, create as a NEW package? [Y/n] y [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-do is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # No extra OS packages requirements found. # All required OS packages found. # Now letting opam install the packages <><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><> [voodoo-prep.~dev] no changes from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 The following actions will be performed: - install ocamlbuild 0.14.3 [required by bos] - install cmdliner 1.2.0 [required by voodoo-prep] - install ocamlfind 1.9.6 [required by bos] - install seq base [required by re] - install dune 3.15.2 [required by voodoo-prep] - install topkg 1.0.7 [required by bos] - install stdlib-shims 0.3.0 [required by ocamlgraph] - install re 1.11.0 [required by opam-format] - install opam-file-format 2.1.6 [required by opam-format] - install cppo 1.6.9 [required by opam-core] - install rresult 0.7.0 [required by bos] - install fmt 0.9.0 [required by bos] - install astring 0.8.5 [required by bos] - install ocamlgraph 2.1.0 [required by opam-core] - install logs 0.7.0 [required by bos] - install fpath 0.7.3 [required by voodoo-prep] - install opam-core 2.1.5 [required by opam-format] - install bos 0.2.1 [required by voodoo-prep] - install opam-format 2.1.5 [required by voodoo-prep] - install voodoo-prep ~dev* ===== 20 to install ===== <><> Gathering sources ><><><><><><><><><><><><><><><><><><><><><><><><><><><><> [astring.0.8.5] found in cache [bos.0.2.1] found in cache [cmdliner.1.2.0] found in cache [cppo.1.6.9] found in cache [dune.3.15.2] found in cache [fmt.0.9.0] found in cache [fpath.0.7.3] found in cache [logs.0.7.0] found in cache [ocamlbuild.0.14.3] found in cache [ocamlfind.1.9.6] found in cache [ocamlgraph.2.1.0] found in cache [opam-core.2.1.5] found in cache [opam-file-format.2.1.6] found in cache [opam-format.2.1.5] found in cache [re.1.11.0] found in cache [rresult.0.7.0] found in cache [stdlib-shims.0.3.0] found in cache [topkg.1.0.7] found in cache [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> installed seq.base -> installed cmdliner.1.2.0 -> installed ocamlfind.1.9.6 -> installed ocamlbuild.0.14.3 -> installed topkg.1.0.7 -> installed rresult.0.7.0 -> installed fmt.0.9.0 -> installed astring.0.8.5 -> installed fpath.0.7.3 -> installed logs.0.7.0 -> installed bos.0.2.1 -> installed dune.3.15.2 -> installed stdlib-shims.0.3.0 -> installed opam-file-format.2.1.6 -> installed cppo.1.6.9 -> installed re.1.11.0 -> installed ocamlgraph.2.1.0 -> installed opam-core.2.1.5 -> installed opam-format.2.1.5 -> installed voodoo-prep.~dev Done. # Run eval $(opam env) to update the current shell environment 2024-05-17 13:50.06 ---> using "86127708139d2d172202f772d6c036323f086431cacbaa6c4a31bf2950cbd98e" from cache /home/opam: (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")) 2024-05-17 13:50.06 ---> using "788dec576c57618a4cc15948e396d930abd9675164f1af5c1581ac65f2bc31f5" from cache 2024-05-17 13:50.06 --> finished "tools" (from ocaml/opam:debian-12-ocaml-5.1@sha256:57d068fb00b19df125347cfd89eefad2653b2fc4b5336b30d766293a6f8414e6) 2024-05-17 13:50.06 ---> using "21c8a5b61b5cb4edf66f4190bf5c4b0e52bef7327a05c34de6f8342edd793c57" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-05-17 13:50.06 ---> using "46e86ad6c91a7732e8a7ff32712bee397c6e462e5217d61d9842ae07d5bb5e2c" from cache /home/opam: (run (shell "sudo mkdir /src")) 2024-05-17 13:50.06 ---> using "ab330ec315986f22005650272d934940278d598a2dcb280c0888bd32672bfe8d" from cache /home/opam: (copy (src packages) (dst /src/packages)) 2024-05-17 13:50.14 ---> saved as "5bf3d16c1758e30b90510b8c2f49fb2d5cbbe6d114785a6eef4dcb13f2845453" /home/opam: (copy (src repo) (dst /src/repo)) 2024-05-17 13:50.14 ---> saved as "05caf8925de112a9ce46c3336071aba3a9968de764df474af49a18b47d3880ac" /home/opam: (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) Configuring from /home/opam/.opamrc and then from built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted. You may want to back it up before going further. Continue? [Y/n] y Format upgrade done. <><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><> [default] synchronised from file:///home/opam/opam-repository 2024-05-17 13:51.30 ---> saved as "c4e9bc1374b63d835fc29556bb9406a183545e4efffb931eb7e826b537768d4a" /home/opam: (run (shell "opam repo remove default && opam repo add opam /src")) Repositories removed from the selections of switch 5.1. Use '--all' to forget about them altogether. [opam] Initialised [NOTE] Repository opam has been added to the selections of switch 5.1 only. Run `opam repository add opam --all-switches|--set-default' to use it in all existing switches, or in newly created switches, respectively. 2024-05-17 13:51.52 ---> saved as "bd2fdf0c571dd65f5f23ac8f6cd62eeb30e1ce7db44543fbd352a74e1e66a225" /home/opam: (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) 2024-05-17 13:51.53 ---> saved as "eb61a69bc6b7f07482c2fda22fd471c4b68a8ed8866150397f214e87b577077c" /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.15.2")) The following actions will be performed: - install dune 3.15.2 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved dune.3.15.2 (cached) -> installed dune.3.15.2 Done. # Run eval $(opam env) to update the current shell environment 2024-05-17 13:52.40 ---> saved as "6c863bd400e248cc2615215256bd30298d20dba7993ba6c86321594d7bcf8ba1" /home/opam: (env DUNE_CACHE enabled) /home/opam: (env DUNE_CACHE_TRANSPORT direct) /home/opam: (env DUNE_CACHE_DUPLICATION copy) /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy ocaml-r.0.3.1 stdio.v0.16.0 sexplib0.v0.16.0 dune-configurator.3.15.2 dune.3.15.2 csexp.1.5.2 conf-r-mathlib.1 conf-r.1.0.0 conf-pkg-config.3 conf-bash.1 base.v0.16.3 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [156 kB] Fetched 259 kB in 0s (1059 kB/s) Reading package lists... Building dependency tree... Reading state information... 1 package can be upgraded. Run 'apt list --upgradable' to see it. Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y The following actions will be performed: - recompile opam-depext 1.2.1-1 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved opam-depext.1.2.1-1 (cached) -> removed opam-depext.1.2.1-1 -> installed opam-depext.1.2.1-1 Done. <><> opam-depext.1.2.1-1 installed successfully <><><><><><><><><><><><><><><><> => opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead # Run eval $(opam env) to update the current shell environment <><> Carrying on to "opam depext -viy ocaml-r.0.3.1 stdio.v0.16.0 sexplib0.v0.16.0 dune-configurator.3.15.2 dune.3.15.2 csexp.1.5.2 conf-r-mathlib.1 conf-r.1.0.0 conf-pkg-config.3 conf-bash.1 base.v0.16.3" You are using opam 2.1+, where external dependency handling has been integrated: consider calling opam directly, the 'depext' plugin interface is provided for backwards compatibility only # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # The following system packages are needed: pkg-config r-base-core r-mathlib [NOTE] Package dune is already installed (current version is 3.15.2). The following actions will be performed: - install conf-r 1.0.0 - install csexp 1.5.2 - install conf-pkg-config 3 - install conf-bash 1 - install sexplib0 v0.16.0 - install dune-configurator 3.15.2 - install conf-r-mathlib 1 - install base v0.16.3 - install stdio v0.16.0 - install ocaml-r 0.3.1 ===== 10 to install ===== The following system packages will first need to be installed: pkg-config r-base-core r-mathlib <><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><> Let opam run your package manager to install the required system packages? (answer 'n' for other options) [Y/n] y + /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "pkg-config" "r-base-core" "r-mathlib" - debconf: delaying package configuration, since apt-utils is not installed - Selecting previously unselected package libdbus-1-3:amd64. - (Reading database ... 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libpng-tools (1.6.39-2) ... - Setting up libxcb-render0:amd64 (1.15-1) ... - Setting up libclone-perl:amd64 (0.46-1) ... - Setting up libglib2.0-0:amd64 (2.74.6-2+deb12u2) ... - No schema files found: doing nothing. - Setting up libglvnd0:amd64 (1.6.0-1) ... - Setting up libio-stringy-perl (2.111-3) ... - Setting up libhtml-tagset-perl (3.20-6) ... - Setting up libauthen-sasl-perl (2.1600-3) ... - Setting up libxcb-glx0:amd64 (1.15-1) ... - Setting up liblwp-mediatypes-perl (6.04-2) ... - Setting up libxcb-shape0:amd64 (1.15-1) ... - Setting up x11-common (1:7.7+23) ... - invoke-rc.d: could not determine current runlevel - invoke-rc.d: policy-rc.d denied execution of restart. - Setting up libtry-tiny-perl (0.31-2) ... - Setting up libsensors-config (1:3.6.0-7.1) ... - Setting up libxxf86dga1:amd64 (2:1.1.5-1) ... - Setting up perl-openssl-defaults:amd64 (7+b1) ... - Setting up libencode-locale-perl (1.05-3) ... - Setting up libxcb-shm0:amd64 (1.15-1) ... - Setting up libcairo2:amd64 (1.16.0-7) ... - Setting up libpcre2-16-0:amd64 (10.42-1) ... - Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... - Setting up libxcb-present0:amd64 (1.15-1) ... - Setting up libpcre3:amd64 (2:8.39-15) ... - Setting up zip (3.0-13) ... - Setting up libfontenc1:amd64 (1:1.1.4-1) ... - Setting up libz3-4:amd64 (4.8.12-3.1) ... - Setting up libpcre2-32-0:amd64 (10.42-1) ... - Setting up libblas3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode - Setting up libglib2.0-data (2.74.6-2+deb12u2) ... - Setting up libpkgconf3:amd64 (1.8.1-1) ... - Setting up libgles2:amd64 (1.6.0-1) ... - Setting up libdata-dump-perl (1.25-1) ... - Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-2) ... - Setting up libxfixes3:amd64 (1:6.0.0-2) ... - Setting up libxcb-sync1:amd64 (1.15-1) ... - Setting up libipc-system-simple-perl (1.30-2) ... - Setting up libxml-xpathengine-perl (0.14-2) ... - Setting up libncurses6:amd64 (6.4-4) ... - Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... - Setting up libfribidi0:amd64 (1.0.8-2.1) ... - Setting up libxinerama1:amd64 (2:1.1.4-3) ... - Setting up libxv1:amd64 (2:1.0.11-1.1) ... - Setting up libpcre32-3:amd64 (2:8.39-15) ... - Setting up libio-html-perl (1.004-3) ... - Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... - Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... - Setting up icu-devtools (72.1-3) ... - Setting up pkgconf-bin (1.8.1-1) ... - Setting up libsensors5:amd64 (1:3.6.0-7.1) ... - Setting up libglapi-mesa:amd64 (22.3.6-1+deb12u1) ... - Setting up libgfortran5:amd64 (12.2.0-14) ... - Setting up libtimedate-perl (2.3300-2) ... - Setting up libregexp-ipv6-perl (0.03-3) ... - Setting up liblzma-dev:amd64 (5.4.1-0.2) ... - Setting up libxcb-dri2-0:amd64 (1.15-1) ... - Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... - Setting up libpcre2-posix3:amd64 (10.42-1) ... - Setting up sensible-utils (0.0.17+nmu1) ... - Setting up libxshmfence1:amd64 (1.3-1) ... - Setting up libxcb-randr0:amd64 (1.15-1) ... - Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ... - Setting up r-mathlib (4.2.2.20221110-2) ... - Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... - Setting up libthai-data (0.1.29-1) ... - Setting up libxss1:amd64 (1:1.2.3-1) ... - Setting up libxkbfile1:amd64 (1:1.1.0-1) ... - Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... - Setting up libdrm-common (2.4.114-1) ... - Setting up libelf1:amd64 (0.188-2.1) ... - Setting up libxcomposite1:amd64 (1:0.4.5-1) ... - Setting up libicu-dev:amd64 (72.1-3) ... - Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... - Setting up xdg-utils (1.1.3-4.1) ... - update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode - Setting up liburi-perl (5.17-1) ... - Setting up dbus-bin (1.14.10-1~deb12u1) ... - Setting up libx11-protocol-perl (0.56-9) ... - Setting up libblas-dev:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode - Setting up libbz2-dev:amd64 (1.0.8-5+b1) ... - Setting up libwayland-client0:amd64 (1.21.0-1) ... - Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... - Setting up libpcrecpp0v5:amd64 (2:8.39-15) ... - Setting up libice6:amd64 (2:1.0.10-1) ... - Setting up libhttp-date-perl (6.05-2) ... - Setting up liblapack3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode - Setting up libxft2:amd64 (2.3.6-1) ... - Setting up libncurses-dev:amd64 (6.4-4) ... - Setting up libfile-basedir-perl (0.09-2) ... - Setting up libfile-listing-perl (6.15-1) ... - Setting up libpcre2-dev:amd64 (10.42-1) ... - Setting up libpcre3-dev:amd64 (2:8.39-15) ... - Setting up libxtst6:amd64 (2:1.2.3-1.1) ... - Setting up libtk8.6:amd64 (8.6.13-2) ... - Setting up libxcursor1:amd64 (1:1.2.1-1) ... - Setting up libpng-dev:amd64 (1.6.39-2) ... - Setting up libjpeg-dev:amd64 (1:2.1.5-2) ... - Setting up libnet-http-perl (6.22-1) ... - Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... - Setting up dbus-daemon (1.14.10-1~deb12u1) ... - Setting up libreadline-dev:amd64 (8.2-1.3) ... - Setting up pkgconf:amd64 (1.8.1-1) ... - Setting up libthai0:amd64 (0.1.29-1) ... - Setting up gfortran-12 (12.2.0-14) ... - Setting up dbus (1.14.10-1~deb12u1) ... - invoke-rc.d: could not determine current runlevel - invoke-rc.d: policy-rc.d denied execution of start. - Setting up shared-mime-info (2.2-1) ... - Setting up liblapack-dev:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode - Setting up pkg-config:amd64 (1.8.1-1) ... - Setting up ucf (3.0043+nmu1) ... - Setting up libfile-desktopentry-perl (0.22-3) ... - Setting up libwww-robotrules-perl (6.02-1) ... - Setting up libdrm2:amd64 (2.4.114-1+b1) ... - Setting up libhtml-parser-perl:amd64 (3.81-1) ... - Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... - Setting up libncurses5-dev:amd64 (6.4-4) ... - Setting up libsm6:amd64 (2:1.2.3-1) ... - Setting up libio-socket-ssl-perl (2.081-2) ... - Setting up libhttp-message-perl (6.44-1) ... - Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... - Setting up libhtml-form-perl (6.11-1) ... - Setting up libfile-mimeinfo-perl (0.33-1) ... - Setting up libpaper1:amd64 (1.1.29) ... - - Creating config file /etc/papersize with new version - Setting up libhttp-negotiate-perl (6.01-2) ... - Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... - Setting up libgbm1:amd64 (22.3.6-1+deb12u1) ... - Setting up libhttp-cookies-perl (6.10-1) ... - Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... - Setting up libhtml-tree-perl (5.07-3) ... - Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... - Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... - Setting up libhtml-format-perl (2.16-2) ... - Setting up libpaper-utils (1.1.29) ... - Setting up gfortran (4:12.2.0-3) ... - update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode - update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode - Setting up libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up libnet-smtp-ssl-perl (1.04-2) ... - Setting up libmailtools-perl (2.21-2) ... - Setting up libxt6:amd64 (1:1.2.1-1.1) ... - Setting up libhttp-daemon-perl (6.16-1) ... - Setting up libegl1:amd64 (1.6.0-1) ... - Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libxmu6:amd64 (2:1.1.3-3) ... - Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up libglx0:amd64 (1.6.0-1) ... - Setting up libxaw7:amd64 (2:1.0.14-1) ... - Setting up x11-xserver-utils (7.7+9+b1) ... - Setting up libgl1:amd64 (1.6.0-1) ... - Setting up r-base-core (4.2.2.20221110-2) ... - - Creating config file /etc/R/Renviron with new version - Setting up r-cran-lattice (0.20-45-3) ... - Setting up r-cran-nlme (3.1.162-1) ... - Setting up zutty (0.14.0.20230218+dfsg1-1) ... - update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode - Setting up r-cran-cluster (2.1.4-1) ... - Setting up x11-utils (7.7+5) ... - Setting up r-cran-nnet (7.3-18-1) ... - Setting up r-cran-codetools (0.2-19-1) ... - Setting up r-cran-boot (1.3-28.1-1) ... - Setting up r-base-dev (4.2.2.20221110-2) ... - Setting up r-cran-spatial (7.3-16-1) ... - Setting up r-cran-mass (7.3-58.2-1) ... - Setting up r-cran-foreign (0.8.84-1) ... - Setting up r-cran-matrix (1.5-3-1) ... - Setting up r-cran-kernsmooth (2.23-20-1) ... - Setting up r-cran-mgcv (1.8-41-1) ... - Setting up r-cran-class (7.3-21-1) ... - Setting up r-cran-survival (3.5-3-1) ... - Setting up r-cran-rpart (4.1.19-1) ... - Setting up r-recommended (4.2.2.20221110-2) ... - Setting up liblwp-protocol-https-perl (6.10-1) ... - Setting up libwww-perl (6.68-1) ... - Setting up libxml-parser-perl (2.46-4) ... - Setting up libxml-twig-perl (1:3.52-2) ... - Setting up libnet-dbus-perl (1.2.0-2) ... - Processing triggers for libc-bin (2.36-9+deb12u7) ... <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> Processing 1/30: Processing 2/30: Processing 3/30: Processing 4/30: Processing 5/30: Processing 6/30: Processing 7/30: Processing 8/30: [conf-bash: bash] Processing 9/30: [conf-bash: bash] [conf-pkg-config: pkg-config] Processing 10/30: [conf-bash: bash] [conf-pkg-config: pkg-config] [conf-r: R CMD] -> retrieved base.v0.16.3 (cached) Processing 11/30: [conf-bash: bash] [conf-pkg-config: pkg-config] [conf-r: R CMD] -> retrieved csexp.1.5.2 (cached) Processing 12/30: [conf-bash: bash] [conf-pkg-config: pkg-config] [conf-r: R CMD] Processing 13/30: [conf-bash: bash] [conf-pkg-config: pkg-config] [conf-r: R CMD] [csexp: dune build] -> retrieved dune-configurator.3.15.2 (cached) Processing 14/30: [conf-bash: bash] [conf-pkg-config: pkg-config] [conf-r: R CMD] [csexp: dune build] - GNU bash, version 5.2.15(1)-release (x86_64-pc-linux-gnu) - Copyright (C) 2022 Free Software Foundation, Inc. - License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> - - This is free software; you are free to change and redistribute it. - There is NO WARRANTY, to the extent permitted by law. -> compiled conf-bash.1 Processing 14/30: [conf-pkg-config: pkg-config] [conf-r: R CMD] [csexp: dune build] -> installed conf-bash.1 Processing 15/30: [conf-pkg-config: pkg-config] [conf-r: R CMD] [csexp: dune build] - usage: pkgconf [OPTIONS] [LIBRARIES] - - basic options: - - --help this message - --about print pkgconf version and license to stdout - --version print supported pkg-config version to stdout - --atleast-pkgconfig-version check whether or not pkgconf is compatible - with a specified pkg-config version - --errors-to-stdout print all errors on stdout instead of stderr - --print-errors ensure all errors are printed - --short-errors be less verbose about some errors - --silence-errors explicitly be silent about errors - --list-all list all known packages - --list-package-names list all known package names - --simulate simulate walking the calculated dependency graph - --no-cache do not cache already seen packages when - walking the dependency graph - --log-file=filename write an audit log to a specified file - --with-path=path adds a directory to the search path - --define-prefix override the prefix variable with one that is guessed based on - the location of the .pc file - --dont-define-prefix do not override the prefix variable under any circumstances - --prefix-variable=varname sets the name of the variable that pkgconf considers - to be the package prefix - --relocate=path relocates a path and exits (mostly for testsuite) - --dont-relocate-paths disables path relocation support - - cross-compilation personality support: - - --personality=triplet|filename sets the personality to 'triplet' or a file named 'filename' - --dump-personality dumps details concerning selected personality - - checking specific pkg-config database entries: - - --atleast-version require a specific version of a module - --exact-version require an exact version of a module - --max-version require a maximum version of a module - --exists check whether or not a module exists - --uninstalled check whether or not an uninstalled module will be used - --no-uninstalled never use uninstalled modules when satisfying dependencies - --no-provides do not use 'provides' rules to resolve dependencies - --maximum-traverse-depth maximum allowed depth for dependency graph - --static be more aggressive when computing dependency graph - (for static linking) - --shared use a simplified dependency graph (usually default) - --pure optimize a static dependency graph as if it were a normal - dependency graph - --env-only look only for package entries in PKG_CONFIG_PATH - --ignore-conflicts ignore 'conflicts' rules in modules - --validate validate specific .pc files for correctness - - querying specific pkg-config database fields: - - --define-variable=varname=value define variable 'varname' as 'value' - --variable=varname print specified variable entry to stdout - --cflags print required CFLAGS to stdout - --cflags-only-I print required include-dir CFLAGS to stdout - --cflags-only-other print required non-include-dir CFLAGS to stdout - --libs print required linker flags to stdout - --libs-only-L print required LDPATH linker flags to stdout - --libs-only-l print required LIBNAME linker flags to stdout - --libs-only-other print required other linker flags to stdout - --print-requires print required dependency frameworks to stdout - --print-requires-private print required dependency frameworks for static - linking to stdout - --print-provides print provided dependencies to stdout - --print-variables print all known variables in module to stdout - --digraph print entire dependency graph in graphviz 'dot' format - --keep-system-cflags keep -I/usr/include entries in cflags output - --keep-system-libs keep -L/lib:/lib/i386-linux-gnu:/lib/x86_64-linux-gnu:/lib/x86_64-linux-gnux32:/lib32:/libx32:/usr/lib:/usr/lib/i386-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnux32:/usr/lib32:/usr/libx32 entries in libs output - --path show the exact filenames for any matching .pc files - --modversion print the specified module's version to stdout - --internal-cflags do not filter 'internal' cflags from output - - filtering output: - - --msvc-syntax print translatable fragments in MSVC syntax - --fragment-filter=types filter output fragments to the specified types - - report bugs to <https://github.com/pkgconf/pkgconf/issues/new>. -> compiled conf-pkg-config.3 Processing 15/30: [conf-r: R CMD] [csexp: dune build] -> installed conf-pkg-config.3 Processing 16/30: [conf-r: R CMD] [csexp: dune build] Processing 17/30: [conf-r: R CMD] [conf-r-mathlib: pkg-config libRmath] [csexp: dune build] -> compiled conf-r.1.0.0 Processing 17/30: [conf-r-mathlib: pkg-config libRmath] [csexp: dune build] -> installed conf-r.1.0.0 Processing 18/30: [conf-r-mathlib: pkg-config libRmath] [csexp: dune build] -> retrieved ocaml-r.0.3.1 (cached) -> retrieved sexplib0.v0.16.0 (cached) Processing 19/30: [conf-r-mathlib: pkg-config libRmath] [csexp: dune build] [sexplib0: dune build] -> compiled csexp.1.5.2 Processing 19/30: [conf-r-mathlib: pkg-config libRmath] [sexplib0: dune build] -> installed csexp.1.5.2 Processing 20/30: [conf-r-mathlib: pkg-config libRmath] [sexplib0: dune build] Processing 21/30: [conf-r-mathlib: pkg-config libRmath] [dune-configurator: rm] [sexplib0: dune build] -> retrieved stdio.v0.16.0 (cached) -> compiled conf-r-mathlib.1 Processing 21/30: [dune-configurator: rm] [sexplib0: dune build] -> installed conf-r-mathlib.1 Processing 22/30: [dune-configurator: rm] [sexplib0: dune build] Processing 22/30: [dune-configurator: dune build] [sexplib0: dune build] -> compiled sexplib0.v0.16.0 Processing 22/30: [dune-configurator: dune build] -> installed sexplib0.v0.16.0 Processing 23/30: [dune-configurator: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "dune-configurator" "-j" "31" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dune-configurator.3.15.2) -> compiled dune-configurator.3.15.2 -> installed dune-configurator.3.15.2 Processing 25/30: [base: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "base" "-j" "31" (CWD=/home/opam/.opam/5.1/.opam-switch/build/base.v0.16.3) -> compiled base.v0.16.3 -> installed base.v0.16.3 Processing 27/30: [stdio: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "stdio" "-j" "31" (CWD=/home/opam/.opam/5.1/.opam-switch/build/stdio.v0.16.0) -> compiled stdio.v0.16.0 -> installed stdio.v0.16.0 Processing 29/30: [ocaml-r: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "ocaml-r" "-j" "31" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ocaml-r.0.3.1) - (cd _build/default && /home/opam/.opam/5.1/bin/ocamlc.opt -w -40 -g -bin-annot -I stubgen/.stubgen.eobjs/byte -I /home/opam/.opam/5.1/lib/base -I /home/opam/.opam/5.1/lib/base/base_internalhash_types -I /home/opam/.opam/5.1/lib/base/caml -I /home/opam/.opam/5.1/lib/base/shadow_stdlib -I /home/opam/.opam/5.1/lib/ocaml/unix -I /home/opam/.opam/5.1/lib/sexplib0 -I lib/.OCamlR.objs/byte -I lib/interpreter/.OCamlR_interpreter.objs/byte -no-alias-deps -o stubgen/.stubgen.eobjs/byte/stubgen.cmo -c -impl stubgen/stubgen.ml) - File "stubgen/stubgen.ml", line 43, characters 23-33: - 43 | if List.mem ~equal:Caml.( = ) keywords n then n ^ "_" - ^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - - File "stubgen/stubgen.ml", line 106, characters 2-20: - 106 | Caml.print_endline "open OCamlR" ; - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - - File "stubgen/stubgen.ml", line 107, characters 2-20: - 107 | Caml.print_endline ( - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - - File "stubgen/stubgen.ml", line 116, characters 11-29: - 116 | |> Caml.print_endline - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - - File "stubgen/stubgen.ml", line 120, characters 31-44: - 120 | generate_stub_ml_for_package Caml.Sys.argv.(1) - ^^^^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - (cd _build/default && /home/opam/.opam/5.1/bin/ocamlopt.opt -w -40 -g -I stubgen/.stubgen.eobjs/byte -I stubgen/.stubgen.eobjs/native -I /home/opam/.opam/5.1/lib/base -I /home/opam/.opam/5.1/lib/base/base_internalhash_types -I /home/opam/.opam/5.1/lib/base/caml -I /home/opam/.opam/5.1/lib/base/shadow_stdlib -I /home/opam/.opam/5.1/lib/ocaml/unix -I /home/opam/.opam/5.1/lib/sexplib0 -I lib/.OCamlR.objs/byte -I lib/.OCamlR.objs/native -I lib/interpreter/.OCamlR_interpreter.objs/byte -I lib/interpreter/.OCamlR_interpreter.objs/native -intf-suffix .ml -no-alias-deps -o stubgen/.stubgen.eobjs/native/stubgen.cmx -c -impl stubgen/stubgen.ml) - File "stubgen/stubgen.ml", line 43, characters 23-33: - 43 | if List.mem ~equal:Caml.( = ) keywords n then n ^ "_" - ^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - - File "stubgen/stubgen.ml", line 106, characters 2-20: - 106 | Caml.print_endline "open OCamlR" ; - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - - File "stubgen/stubgen.ml", line 107, characters 2-20: - 107 | Caml.print_endline ( - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - - File "stubgen/stubgen.ml", line 116, characters 11-29: - 116 | |> Caml.print_endline - ^^^^^^^^^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - - File "stubgen/stubgen.ml", line 120, characters 31-44: - 120 | generate_stub_ml_for_package Caml.Sys.argv.(1) - ^^^^^^^^^^^^^ - Alert deprecated: module Caml - [since v0.16] use Stdlib instead of Caml - File "lib/dune", line 10, characters 19-38: - 10 | write_internal_stub - ^^^^^^^^^^^^^^^^^^^ - (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -pthread -fPIC -D_FILE_OFFSET_BITS=64 -I/usr/share/R/include -g -I /home/opam/.opam/5.1/lib/ocaml -I /home/opam/.opam/5.1/lib/ocaml/unix -o write_internal_stub.o -c write_internal_stub.c) - write_internal_stub.c: In function 'ocamlr_write_lisplist_carval': - write_internal_stub.c:50:21: error: invalid use of undefined type 'struct SEXPREC' - 50 | Sexp_val(lisplist)->u.listsxp.carval = Sexp_val(elmnt); - | ^~ - write_internal_stub.c: In function 'ocamlr_write_lisplist_tagval': - write_internal_stub.c:55:21: error: invalid use of undefined type 'struct SEXPREC' - 55 | Sexp_val(lisplist)->u.listsxp.tagval = Sexp_val(tag); - | ^~ - File "lib/dune", line 9, characters 19-37: - 9 | read_internal_stub - ^^^^^^^^^^^^^^^^^^ - (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -pthread -fPIC -D_FILE_OFFSET_BITS=64 -I/usr/share/R/include -g -I /home/opam/.opam/5.1/lib/ocaml -I /home/opam/.opam/5.1/lib/ocaml/unix -o read_internal_stub.o -c read_internal_stub.c) - In file included from read_internal_stub.c:32: - read_internal_stub.c: In function 'ocamlr_inspect_primsxp_offset': - read_internal_stub.c:108:32: error: invalid use of undefined type 'struct SEXPREC' - 108 | return(Val_int(Sexp_val(sexp)->u.primsxp.offset)); - | ^~ - /home/opam/.opam/5.1/lib/ocaml/caml/mlvalues.h:77:47: note: in definition of macro 'Val_long' - 77 | #define Val_long(x) ((intnat) (((uintnat)(x) << 1)) + 1) - | ^ - read_internal_stub.c:108:10: note: in expansion of macro 'Val_int' - 108 | return(Val_int(Sexp_val(sexp)->u.primsxp.offset)); - | ^~~~~~~ - read_internal_stub.c: In function 'ocamlr_inspect_promsxp_value': - read_internal_stub.c:241:33: error: invalid use of undefined type 'struct SEXPREC' - 241 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.value)); - | ^~ - read_internal_stub.c: In function 'ocamlr_inspect_promsxp_expr': - read_internal_stub.c:254:33: error: invalid use of undefined type 'struct SEXPREC' - 254 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.expr)); - | ^~ - read_internal_stub.c: In function 'ocamlr_inspect_promsxp_env': - read_internal_stub.c:267:33: error: invalid use of undefined type 'struct SEXPREC' - 267 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.env)); - | ^~ [ERROR] The compilation of ocaml-r.0.3.1 failed at "dune build -p ocaml-r -j 31". #=== ERROR while compiling ocaml-r.0.3.1 ======================================# # context 2.1.5 | linux/x86_64 | ocaml-base-compiler.5.1.1 | file:///src # path ~/.opam/5.1/.opam-switch/build/ocaml-r.0.3.1 # command ~/.opam/5.1/bin/dune build -p ocaml-r -j 31 # exit-code 1 # env-file ~/.opam/log/ocaml-r-113-7f285a.env # output-file ~/.opam/log/ocaml-r-113-7f285a.out ### output ### # (cd _build/default && /home/opam/.opam/5.1/bin/ocamlc.opt -w -40 -g -bin-annot -I stubgen/.stubgen.eobjs/byte -I /home/opam/.opam/5.1/lib/base -I /home/opam/.opam/5.1/lib/base/base_internalhash_types -I /home/opam/.opam/5.1/lib/base/caml -I /home/opam/.opam/5.1/lib/base/shadow_stdlib -I /home/opam/.opam/5.1/lib/ocaml/unix -I /home/opam/.opam/5.1/lib/sexplib0 -I lib/.OCamlR.objs/byte -I lib/interpreter/.OCamlR_interpreter.objs/byte -no-alias-deps -o stubgen/.stubgen.eobjs/byte/stubgen.cmo -c -impl stubgen/stubgen.ml) # File "stubgen/stubgen.ml", line 43, characters 23-33: # 43 | if List.mem ~equal:Caml.( = ) keywords n then n ^ "_" # ^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # # File "stubgen/stubgen.ml", line 106, characters 2-20: # 106 | Caml.print_endline "open OCamlR" ; # ^^^^^^^^^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # # File "stubgen/stubgen.ml", line 107, characters 2-20: # 107 | Caml.print_endline ( # ^^^^^^^^^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # # File "stubgen/stubgen.ml", line 116, characters 11-29: # 116 | |> Caml.print_endline # ^^^^^^^^^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # # File "stubgen/stubgen.ml", line 120, characters 31-44: # 120 | generate_stub_ml_for_package Caml.Sys.argv.(1) # ^^^^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # (cd _build/default && /home/opam/.opam/5.1/bin/ocamlopt.opt -w -40 -g -I stubgen/.stubgen.eobjs/byte -I stubgen/.stubgen.eobjs/native -I /home/opam/.opam/5.1/lib/base -I /home/opam/.opam/5.1/lib/base/base_internalhash_types -I /home/opam/.opam/5.1/lib/base/caml -I /home/opam/.opam/5.1/lib/base/shadow_stdlib -I /home/opam/.opam/5.1/lib/ocaml/unix -I /home/opam/.opam/5.1/lib/sexplib0 -I lib/.OCamlR.objs/byte -I lib/.OCamlR.objs/native -I lib/interpreter/.OCamlR_interpreter.objs/byte -I lib/interpreter/.OCamlR_interpreter.objs/native -intf-suffix .ml -no-alias-deps -o stubgen/.stubgen.eobjs/native/stubgen.cmx -c -impl stubgen/stubgen.ml) # File "stubgen/stubgen.ml", line 43, characters 23-33: # 43 | if List.mem ~equal:Caml.( = ) keywords n then n ^ "_" # ^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # # File "stubgen/stubgen.ml", line 106, characters 2-20: # 106 | Caml.print_endline "open OCamlR" ; # ^^^^^^^^^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # # File "stubgen/stubgen.ml", line 107, characters 2-20: # 107 | Caml.print_endline ( # ^^^^^^^^^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # # File "stubgen/stubgen.ml", line 116, characters 11-29: # 116 | |> Caml.print_endline # ^^^^^^^^^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # # File "stubgen/stubgen.ml", line 120, characters 31-44: # 120 | generate_stub_ml_for_package Caml.Sys.argv.(1) # ^^^^^^^^^^^^^ # Alert deprecated: module Caml # [since v0.16] use Stdlib instead of Caml # File "lib/dune", line 10, characters 19-38: # 10 | write_internal_stub # ^^^^^^^^^^^^^^^^^^^ # (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -pthread -fPIC -D_FILE_OFFSET_BITS=64 -I/usr/share/R/include -g -I /home/opam/.opam/5.1/lib/ocaml -I /home/opam/.opam/5.1/lib/ocaml/unix -o write_internal_stub.o -c write_internal_stub.c) # write_internal_stub.c: In function 'ocamlr_write_lisplist_carval': # write_internal_stub.c:50:21: error: invalid use of undefined type 'struct SEXPREC' # 50 | Sexp_val(lisplist)->u.listsxp.carval = Sexp_val(elmnt); # | ^~ # write_internal_stub.c: In function 'ocamlr_write_lisplist_tagval': # write_internal_stub.c:55:21: error: invalid use of undefined type 'struct SEXPREC' # 55 | Sexp_val(lisplist)->u.listsxp.tagval = Sexp_val(tag); # | ^~ # File "lib/dune", line 9, characters 19-37: # 9 | read_internal_stub # ^^^^^^^^^^^^^^^^^^ # (cd _build/default/lib && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -pthread -fPIC -D_FILE_OFFSET_BITS=64 -I/usr/share/R/include -g -I /home/opam/.opam/5.1/lib/ocaml -I /home/opam/.opam/5.1/lib/ocaml/unix -o read_internal_stub.o -c read_internal_stub.c) # In file included from read_internal_stub.c:32: # read_internal_stub.c: In function 'ocamlr_inspect_primsxp_offset': # read_internal_stub.c:108:32: error: invalid use of undefined type 'struct SEXPREC' # 108 | return(Val_int(Sexp_val(sexp)->u.primsxp.offset)); # | ^~ # /home/opam/.opam/5.1/lib/ocaml/caml/mlvalues.h:77:47: note: in definition of macro 'Val_long' # 77 | #define Val_long(x) ((intnat) (((uintnat)(x) << 1)) + 1) # | ^ # read_internal_stub.c:108:10: note: in expansion of macro 'Val_int' # 108 | return(Val_int(Sexp_val(sexp)->u.primsxp.offset)); # | ^~~~~~~ # read_internal_stub.c: In function 'ocamlr_inspect_promsxp_value': # read_internal_stub.c:241:33: error: invalid use of undefined type 'struct SEXPREC' # 241 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.value)); # | ^~ # read_internal_stub.c: In function 'ocamlr_inspect_promsxp_expr': # read_internal_stub.c:254:33: error: invalid use of undefined type 'struct SEXPREC' # 254 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.expr)); # | ^~ # read_internal_stub.c: In function 'ocamlr_inspect_promsxp_env': # read_internal_stub.c:267:33: error: invalid use of undefined type 'struct SEXPREC' # 267 | return(Val_sexp(Sexp_val(sexp)->u.promsxp.env)); # | ^~ <><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><> +- The following actions failed | - build ocaml-r 0.3.1 +- +- The following changes have been performed | - install base v0.16.3 | - install conf-bash 1 | - install conf-pkg-config 3 | - install conf-r 1.0.0 | - install conf-r-mathlib 1 | - install csexp 1.5.2 | - install dune-configurator 3.15.2 | - install sexplib0 v0.16.0 | - install stdio v0.16.0 +- # Run eval $(opam env) to update the current shell environment The former state can be restored with: /usr/bin/opam switch import "/home/opam/.opam/5.1/.opam-switch/backup/state-20240517135416.export" 'opam --cli=2.1 install ocaml-r.0.3.1 stdio.v0.16.0 sexplib0.v0.16.0 dune-configurator.3.15.2 dune.3.15.2 csexp.1.5.2 conf-r-mathlib.1 conf-r.1.0.0 conf-pkg-config.3 conf-bash.1 base.v0.16.3 --verbose --yes --confirm-level=unsafe-yes' failed. 2024-05-17 13:55.15 ---> saved as "eefa8177e4b8d6086bc16e7cd4f0f26d6eb4beb215c57c62dca28f22224a8b7f" /home/opam: (run (shell "opam exec -- ~/voodoo-prep -u ocaml-r:8f359c467d8d438eda2602ca90c4cf22")) 2024-05-17 13:55.17 ---> saved as "93fcc45debd32b79c34afd8c2016bcb28ffce1ea95d1f971bfa0763d5d94a5d7" /home/opam: (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.357885') && (for DATA in prep/universes/8f359c467d8d438eda2602ca90c4cf22/ocaml-r/0.3.1,ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22,ocaml-r.0.3.1; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/8f359c467d8d438eda2602ca90c4cf22/ocaml-r/0.3.1,ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22,ocaml-r.0.3.1; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/8f359c467d8d438eda2602ca90c4cf22/ocaml-r/0.3.1,ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22,ocaml-r.0.3.1; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) 0.357885 FAILED:ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22 prep/universes/8f359c467d8d438eda2602ca90c4cf22/ocaml-r/0.3.1/opam prep/universes/8f359c467d8d438eda2602ca90c4cf22/ocaml-r/0.3.1/opam.err.log Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. HASHES:ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22:c633149b61d016477b7777fa4755ef338085ab37480c19e74405d02429eabc7a 2024-05-17 13:55.19 ---> saved as "ccc25f1a6c1cfb09600793c96f4b15f9b7acab425383de8a707468be126d35e1" Job succeeded 2024-05-17 13:59.22: Failed: ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22 2024-05-17 13:59.22: ocaml-r.0.3.1-8f359c467d8d438eda2602ca90c4cf22 -> c633149b61d016477b7777fa4755ef338085ab37480c19e74405d02429eabc7a 2024-05-17 13:59.22: Job succeeded