Build:
- 0
2024-04-22 11:07.59: New job: Voodoo prep lbvs_consent.2.2.0; cbfa87e43e3cdbd35f00ca58aab32ccb 2024-04-22 11:07.59: Waiting for resource in pool OCluster 2024-04-22 11:09.47: Waiting for worker… 2024-04-22 11:09.47: Got resource from pool OCluster 2024-04-22 11:09.47: Using cache hint "docs-universe-prep-5.1.0" To reproduce locally: cat > prep.spec <<'END-OF-SPEC' ((build tools ((from ocaml/opam:debian-12-ocaml-5.1@sha256:669c64f0c8e5a1e3d8f00427a9aa7acde43599283cef09c3670c0d9ae5996c2a) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")))) (from ocaml/opam:debian-12-ocaml-5.1@sha256:669c64f0c8e5a1e3d8f00427a9aa7acde43599283cef09c3670c0d9ae5996c2a) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (shell "sudo mkdir /src")) (copy (src packages) (dst /src/packages)) (copy (src repo) (dst /src/repo)) (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) (run (shell "opam repo remove default && opam repo add opam /src")) (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.15.0 ocamlfind.1.9.6")) (env DUNE_CACHE enabled) (env DUNE_CACHE_TRANSPORT direct) (env DUNE_CACHE_DUPLICATION copy) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy lbvs_consent.2.2.0 vpt.5.0.0 stdlib-shims.0.3.0 sexplib0.v0.16.0 seq.base qcheck-ounit.0.21.3 qcheck-core.0.21.3 qcheck.0.21.3 ppxlib.0.32.1~5.2preview ppx_derivers.1.2.1 parany.14.0.1 ounit2.2.2.7 ocamlfind.1.9.6 ocaml-compiler-libs.v0.12.4 num.1.5 minicli.5.0.2 extunix.0.4.1 dune-configurator.3.15.0 dune.3.15.0 dolog.6.0.0 dokeysto.4.0.1 csexp.1.5.2 cpu.2.0.0 cpm.12.2.0 conf-zlib.1 conf-which.1 conf-rdkit.1 conf-python-3.9.0.0 conf-pkg-config.3 conf-openbabel.0.1 conf-boost.1 conf-autoconf.0.1 camlzip.1.11 camlp-streams.5.0.1 bitv.1.6 batteries.3.8.0 base-bytes.base 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) (run (shell "opam exec -- ~/voodoo-prep -u lbvs_consent:cbfa87e43e3cdbd35f00ca58aab32ccb")) (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.081914') && (for DATA in prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0,lbvs_consent.2.2.0-cbfa87e43e3cdbd35f00ca58aab32ccb,lbvs_consent.2.2.0; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0,lbvs_consent.2.2.0-cbfa87e43e3cdbd35f00ca58aab32ccb,lbvs_consent.2.2.0; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0,lbvs_consent.2.2.0-cbfa87e43e3cdbd35f00ca58aab32ccb,lbvs_consent.2.2.0; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) ) END-OF-SPEC ocluster-client submit-obuilder https://github.com/ocaml/opam-repository.git 840d3224078e115aa65b542e86f08f15864ebd30 --local-file prep.spec \ --pool linux-x86_64 --connect ocluster-submission.cap --cache-hint docs-universe-prep-5.1.0 \ --secret ssh_privkey:id_rsa --secret ssh_pubkey:id_rsa.pub--secret ssh_config:ssh_config 2024-04-22 11:09.47: RETRYING: 2024-04-22/110759-voodoo-prep-1e505e Number of retries: 0 (retriable error condition) Building on x86-bm-c5.sw.ocaml.org All commits already cached Updating files: 52% (17740/33516) Updating files: 53% (17764/33516) Updating files: 54% (18099/33516) Updating files: 55% (18434/33516) Updating files: 56% (18769/33516) Updating files: 57% (19105/33516) Updating files: 58% (19440/33516) Updating files: 59% (19775/33516) Updating files: 60% (20110/33516) Updating files: 61% (20445/33516) Updating files: 62% (20780/33516) Updating files: 63% (21116/33516) Updating files: 64% (21451/33516) Updating files: 65% (21786/33516) Updating files: 66% (22121/33516) Updating files: 67% (22456/33516) Updating files: 68% (22791/33516) Updating files: 69% (23127/33516) Updating files: 70% (23462/33516) Updating files: 71% (23797/33516) Updating files: 72% (24132/33516) Updating files: 73% (24467/33516) Updating files: 74% (24802/33516) Updating files: 75% (25137/33516) Updating files: 76% (25473/33516) Updating files: 77% (25808/33516) Updating files: 78% (26143/33516) Updating files: 79% (26478/33516) Updating files: 80% (26813/33516) Updating files: 81% (27148/33516) Updating files: 82% (27484/33516) Updating files: 83% (27819/33516) Updating files: 84% (28154/33516) Updating files: 85% (28489/33516) Updating files: 86% (28824/33516) Updating files: 87% (29159/33516) Updating files: 88% (29495/33516) Updating files: 89% (29830/33516) Updating files: 90% (30165/33516) Updating files: 91% (30500/33516) Updating files: 92% (30835/33516) Updating files: 93% (31170/33516) Updating files: 94% (31506/33516) Updating files: 95% (31841/33516) Updating files: 96% (32176/33516) Updating files: 97% (32511/33516) Updating files: 98% (32846/33516) Updating files: 99% (33181/33516) Updating files: 100% (33516/33516) Updating files: 100% (33516/33516), done. HEAD is now at 840d322407 Merge pull request #24677 from jmid/patch-lbvs_consent (build "tools" …) (from ocaml/opam:debian-12-ocaml-5.1@sha256:669c64f0c8e5a1e3d8f00427a9aa7acde43599283cef09c3670c0d9ae5996c2a) 2024-04-22 11:04.43 ---> saved as "ed5fb8a9e5e2e27b45463d40b3dac1cb7c42cfe327eaaa696e4cb23566bf4b9c" /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-04-22 11:04.43 ---> saved as "01bd74bf8bc6dbb6ccb29c7bc39bc9e75adb7e3264fc5ab6a2db621705f42ffa" /home/opam: (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [155 kB] Fetched 258 kB in 0s (1096 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libpkgconf3 pkgconf pkgconf-bin Suggested packages: m4-doc The following NEW packages will be installed: libpkgconf3 m4 pkg-config pkgconf pkgconf-bin 0 upgraded, 5 newly installed, 0 to remove and 1 not upgraded. Need to get 392 kB of archives. After this operation, 969 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 392 kB in 0s (18.4 MB/s) Selecting previously unselected package libpkgconf3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18766 files and directories currently installed.) Preparing to unpack .../libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../pkgconf_1.8.1-1_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Setting up m4 (1.4.19-3) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... 2024-04-22 11:04.45 ---> saved as "8c84eb0293b29ac04569abac27a1e5a38a93cabbf2af47c871f70cd8430ff367" /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 This will pin the following packages: voodoo-prep, voodoo-lib, voodoo-gen, voodoo-do. Continue? [Y/n] y Package voodoo-prep does not exist, create as a NEW package? [Y/n] y [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-prep is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-lib does not exist, create as a NEW package? [Y/n] y [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-lib is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-gen does not exist, create as a NEW package? [Y/n] y [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-gen is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-do does not exist, create as a NEW package? [Y/n] y [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-do is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # No extra OS packages requirements found. # All required OS packages found. # Now letting opam install the packages <><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><> [voodoo-prep.~dev] no changes from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 The following actions will be performed: - install ocamlbuild 0.14.3 [required by bos] - install dune 3.15.0 [required by voodoo-prep] - install cmdliner 1.2.0 [required by voodoo-prep] - install ocamlfind 1.9.6 [required by bos] - install seq base [required by re] - install stdlib-shims 0.3.0 [required by ocamlgraph] - install opam-file-format 2.1.6 [required by opam-format] - install cppo 1.6.9 [required by opam-core] - install topkg 1.0.7 [required by bos] - install re 1.11.0 [required by opam-format] - install ocamlgraph 2.1.0 [required by opam-core] - install rresult 0.7.0 [required by bos] - install fmt 0.9.0 [required by bos] - install astring 0.8.5 [required by bos] - install opam-core 2.1.5 [required by opam-format] - install logs 0.7.0 [required by bos] - install fpath 0.7.3 [required by voodoo-prep] - install opam-format 2.1.5 [required by voodoo-prep] - install bos 0.2.1 [required by voodoo-prep] - install voodoo-prep ~dev* ===== 20 to install ===== <><> Gathering sources ><><><><><><><><><><><><><><><><><><><><><><><><><><><><> [astring.0.8.5] found in cache [bos.0.2.1] found in cache [cmdliner.1.2.0] found in cache [cppo.1.6.9] found in cache [dune.3.15.0] found in cache [fmt.0.9.0] found in cache [fpath.0.7.3] found in cache [logs.0.7.0] found in cache [ocamlbuild.0.14.3] found in cache [ocamlfind.1.9.6] found in cache [ocamlgraph.2.1.0] found in cache [opam-core.2.1.5] found in cache [opam-file-format.2.1.6] found in cache [opam-format.2.1.5] found in cache [re.1.11.0] found in cache [rresult.0.7.0] found in cache [stdlib-shims.0.3.0] found in cache [topkg.1.0.7] found in cache [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> installed seq.base -> installed cmdliner.1.2.0 -> installed ocamlfind.1.9.6 -> installed ocamlbuild.0.14.3 -> installed topkg.1.0.7 -> installed rresult.0.7.0 -> installed fmt.0.9.0 -> installed astring.0.8.5 -> installed fpath.0.7.3 -> installed logs.0.7.0 -> installed bos.0.2.1 -> installed dune.3.15.0 -> installed stdlib-shims.0.3.0 -> installed opam-file-format.2.1.6 -> installed re.1.11.0 -> installed cppo.1.6.9 -> installed ocamlgraph.2.1.0 -> installed opam-core.2.1.5 -> installed opam-format.2.1.5 -> installed voodoo-prep.~dev Done. # Run eval $(opam env) to update the current shell environment 2024-04-22 11:05.50 ---> saved as "e73e10aa7d007708e9a64b0abbc6d755d7c0edf2cbe1ae1d5acc351166974513" /home/opam: (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")) 2024-04-22 11:05.50 ---> saved as "0b06c545426bc2bf547c6c6cec2b10111a80c5920e46bc0352bc33135caec2d3" 2024-04-22 11:05.50 --> finished "tools" (from ocaml/opam:debian-12-ocaml-5.1@sha256:669c64f0c8e5a1e3d8f00427a9aa7acde43599283cef09c3670c0d9ae5996c2a) 2024-04-22 11:05.50 ---> using "ed5fb8a9e5e2e27b45463d40b3dac1cb7c42cfe327eaaa696e4cb23566bf4b9c" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-04-22 11:05.50 ---> using "01bd74bf8bc6dbb6ccb29c7bc39bc9e75adb7e3264fc5ab6a2db621705f42ffa" from cache /home/opam: (run (shell "sudo mkdir /src")) 2024-04-22 11:05.57 ---> saved as "ea0dab8808d6f9ce3286e30746a15bdab58543629dbb738355cf64a471d7d402" /home/opam: (copy (src packages) (dst /src/packages)) 2024-04-22 11:06.26 ---> saved as "91f54335be927066f402c305d32aaab119931094fb3d14d8dd270e75468ed785" /home/opam: (copy (src repo) (dst /src/repo)) 2024-04-22 11:06.26 ---> saved as "ce19c201a829922373f0bb1b81ac1e308f8793909944a5040c4bbdda4559aade" /home/opam: (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) Configuring from /home/opam/.opamrc and then from built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted. You may want to back it up before going further. Continue? [Y/n] y Format upgrade done. <><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><> [default] synchronised from file:///home/opam/opam-repository 2024-04-22 11:07.45 ---> saved as "37d0a7b598c5c7d6cc7bd014fd2411b6279bf5e288965d1777dc80bd53a2e36a" /home/opam: (run (shell "opam repo remove default && opam repo add opam /src")) Repositories removed from the selections of switch 5.1. Use '--all' to forget about them altogether. [opam] Initialised [NOTE] Repository opam has been added to the selections of switch 5.1 only. Run `opam repository add opam --all-switches|--set-default' to use it in all existing switches, or in newly created switches, respectively. 2024-04-22 11:08.18 ---> saved as "28afb0c292d097b54eba3241736a7dd81a44fa2eb09dd7cec3934a2438ee83c0" /home/opam: (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) 2024-04-22 11:08.19 ---> saved as "b81ffa776f649c9ed01d5af76529a477ffb89dd625411d45cc24bf0d313e33b6" /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam install dune.3.15.0 ocamlfind.1.9.6")) The following actions will be performed: - install dune 3.15.0 - install ocamlfind 1.9.6 ===== 2 to install ===== <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved ocamlfind.1.9.6 (cached) -> retrieved dune.3.15.0 (cached) -> installed ocamlfind.1.9.6 -> installed dune.3.15.0 Done. # Run eval $(opam env) to update the current shell environment 2024-04-22 11:09.51 ---> saved as "98a4ef9eaf3532251a00537fb29e3d4e61d9031cb7917b6437a7feff5ae84af4" /home/opam: (env DUNE_CACHE enabled) /home/opam: (env DUNE_CACHE_TRANSPORT direct) /home/opam: (env DUNE_CACHE_DUPLICATION copy) /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy lbvs_consent.2.2.0 vpt.5.0.0 stdlib-shims.0.3.0 sexplib0.v0.16.0 seq.base qcheck-ounit.0.21.3 qcheck-core.0.21.3 qcheck.0.21.3 ppxlib.0.32.1~5.2preview ppx_derivers.1.2.1 parany.14.0.1 ounit2.2.2.7 ocamlfind.1.9.6 ocaml-compiler-libs.v0.12.4 num.1.5 minicli.5.0.2 extunix.0.4.1 dune-configurator.3.15.0 dune.3.15.0 dolog.6.0.0 dokeysto.4.0.1 csexp.1.5.2 cpu.2.0.0 cpm.12.2.0 conf-zlib.1 conf-which.1 conf-rdkit.1 conf-python-3.9.0.0 conf-pkg-config.3 conf-openbabel.0.1 conf-boost.1 conf-autoconf.0.1 camlzip.1.11 camlp-streams.5.0.1 bitv.1.6 batteries.3.8.0 base-bytes.base 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [155 kB] Fetched 258 kB in 0s (944 kB/s) Reading package lists... Building dependency tree... Reading state information... 1 package can be upgraded. Run 'apt list --upgradable' to see it. Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y The following actions will be performed: - recompile opam-depext 1.2.1-1 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved opam-depext.1.2.1-1 (cached) -> removed opam-depext.1.2.1-1 -> installed opam-depext.1.2.1-1 Done. <><> opam-depext.1.2.1-1 installed successfully <><><><><><><><><><><><><><><><> => opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead # Run eval $(opam env) to update the current shell environment <><> Carrying on to "opam depext -viy lbvs_consent.2.2.0 vpt.5.0.0 stdlib-shims.0.3.0 sexplib0.v0.16.0 seq.base qcheck-ounit.0.21.3 qcheck-core.0.21.3 qcheck.0.21.3 ppxlib.0.32.1~5.2preview ppx_derivers.1.2.1 parany.14.0.1 ounit2.2.2.7 ocamlfind.1.9.6 ocaml-compiler-libs.v0.12.4 num.1.5 minicli.5.0.2 extunix.0.4.1 dune-configurator.3.15.0 dune.3.15.0 dolog.6.0.0 dokeysto.4.0.1 csexp.1.5.2 cpu.2.0.0 cpm.12.2.0 conf-zlib.1 conf-which.1 conf-rdkit.1 conf-python-3.9.0.0 conf-pkg-config.3 conf-openbabel.0.1 conf-boost.1 conf-autoconf.0.1 camlzip.1.11 camlp-streams.5.0.1 bitv.1.6 batteries.3.8.0 base-bytes.base" You are using opam 2.1+, where external dependency handling has been integrated: consider calling opam directly, the 'depext' plugin interface is provided for backwards compatibility only # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # The following system packages are needed: autoconf debianutils libboost-dev libopenbabel-dev librdkit-dev pkg-config python3 python3-rdkit zlib1g-dev [NOTE] Package dune is already installed (current version is 3.15.0). [NOTE] Package ocamlfind is already installed (current version is 1.9.6). The following actions will be performed: - install ppx_derivers 1.2.1 - install minicli 5.0.2 - install num 1.5 - install dolog 6.0.0 - install seq base - install conf-rdkit 1 - install ocaml-compiler-libs v0.12.4 - install base-bytes base - install stdlib-shims 0.3.0 - install conf-python-3 9.0.0 - install vpt 5.0.0 - install conf-pkg-config 3 - install conf-boost 1 - install csexp 1.5.2 - install qcheck-core 0.21.3 - install conf-which 1 - install camlp-streams 5.0.1 - install bitv 1.6 - install sexplib0 v0.16.0 - install ounit2 2.2.7 - install conf-zlib 1 - install conf-openbabel 0.1 - install dune-configurator 3.15.0 - install conf-autoconf 0.1 - install batteries 3.8.0 - install ppxlib 0.32.1~5.2preview - install qcheck-ounit 0.21.3 - install camlzip 1.11 - install cpu 2.0.0 - install cpm 12.2.0 - install extunix 0.4.1 - install qcheck 0.21.3 - install parany 14.0.1 - install dokeysto 4.0.1 - install lbvs_consent 2.2.0 ===== 35 to install ===== The following system packages will first need to be installed: autoconf libboost-dev libopenbabel-dev librdkit-dev pkg-config python3 python3-rdkit zlib1g-dev <><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><> Let opam run your package manager to install the required system packages? (answer 'n' for other options) [Y/n] y + /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "libboost-dev" "libopenbabel-dev" "librdkit-dev" "pkg-config" "python3" "python3-rdkit" "zlib1g-dev" - debconf: delaying package configuration, since apt-utils is not installed - Selecting previously unselected package libpython3.11-minimal:amd64. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18766 files and directories currently installed.) - Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... - Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... - Selecting previously unselected package python3.11-minimal. - Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... - Unpacking python3.11-minimal (3.11.2-6) ... - Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... - Setting up python3.11-minimal (3.11.2-6) ... - Selecting previously unselected package python3-minimal. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19073 files and directories currently installed.) - Preparing to unpack .../python3-minimal_3.11.2-1+b1_amd64.deb ... - Unpacking python3-minimal (3.11.2-1+b1) ... - Selecting previously unselected package media-types. - Preparing to unpack .../media-types_10.0.0_all.deb ... - Unpacking media-types (10.0.0) ... - Selecting previously unselected package libpython3.11-stdlib:amd64. - Preparing to unpack .../libpython3.11-stdlib_3.11.2-6_amd64.deb ... - Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... - Selecting previously unselected package python3.11. - Preparing to unpack .../python3.11_3.11.2-6_amd64.deb ... - Unpacking python3.11 (3.11.2-6) ... - Selecting previously unselected package libpython3-stdlib:amd64. - Preparing to unpack .../libpython3-stdlib_3.11.2-1+b1_amd64.deb ... - Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... - Setting up python3-minimal (3.11.2-1+b1) ... - Selecting previously unselected package python3. - (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19483 files and directories currently installed.) - Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... - Unpacking python3 (3.11.2-1+b1) ... - Selecting previously unselected package m4. - Preparing to unpack .../01-m4_1.4.19-3_amd64.deb ... - Unpacking m4 (1.4.19-3) ... - Selecting previously unselected package autoconf. - Preparing to unpack .../02-autoconf_2.71-3_all.deb ... - Unpacking autoconf (2.71-3) ... - Selecting previously unselected package autotools-dev. - Preparing to unpack .../03-autotools-dev_20220109.1_all.deb ... - Unpacking autotools-dev (20220109.1) ... - Selecting previously unselected package automake. - Preparing to unpack .../04-automake_1%3a1.16.5-1.3_all.deb ... - Unpacking automake (1:1.16.5-1.3) ... - Selecting previously unselected package fonts-freefont-ttf. - Preparing to unpack .../05-fonts-freefont-ttf_20120503-10_all.deb ... - Unpacking fonts-freefont-ttf (20120503-10) ... - Selecting previously unselected package libblas3:amd64. - Preparing to unpack .../06-libblas3_3.11.0-2_amd64.deb ... - Unpacking libblas3:amd64 (3.11.0-2) ... - Selecting previously unselected package libboost1.74-dev:amd64. - Preparing to unpack .../07-libboost1.74-dev_1.74.0+ds1-21_amd64.deb ... - Unpacking libboost1.74-dev:amd64 (1.74.0+ds1-21) ... - Selecting previously unselected package libboost-dev:amd64. - Preparing to unpack .../08-libboost-dev_1.74.0.3_amd64.deb ... - Unpacking libboost-dev:amd64 (1.74.0.3) ... - Selecting previously unselected package libboost-iostreams1.74.0:amd64. - Preparing to unpack .../09-libboost-iostreams1.74.0_1.74.0+ds1-21_amd64.deb ... - Unpacking libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ... - Selecting previously unselected package libboost-python1.74.0. - Preparing to unpack .../10-libboost-python1.74.0_1.74.0+ds1-21_amd64.deb ... - Unpacking libboost-python1.74.0 (1.74.0+ds1-21) ... - Selecting previously unselected package libboost-serialization1.74.0:amd64. - Preparing to unpack .../11-libboost-serialization1.74.0_1.74.0+ds1-21_amd64.deb ... - Unpacking libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ... - Selecting previously unselected package libpixman-1-0:amd64. - Preparing to unpack .../12-libpixman-1-0_0.42.2-1_amd64.deb ... - Unpacking libpixman-1-0:amd64 (0.42.2-1) ... - Selecting previously unselected package libxcb-render0:amd64. - Preparing to unpack .../13-libxcb-render0_1.15-1_amd64.deb ... - Unpacking libxcb-render0:amd64 (1.15-1) ... - Selecting previously unselected package libxcb-shm0:amd64. - Preparing to unpack .../14-libxcb-shm0_1.15-1_amd64.deb ... - Unpacking libxcb-shm0:amd64 (1.15-1) ... - Selecting previously unselected package libxrender1:amd64. - Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1_amd64.deb ... - Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... - Selecting previously unselected package libcairo2:amd64. - Preparing to unpack .../16-libcairo2_1.16.0-7_amd64.deb ... - Unpacking libcairo2:amd64 (1.16.0-7) ... - Selecting previously unselected package libcoordgen3:amd64. - Preparing to unpack .../17-libcoordgen3_3.0.1-1_amd64.deb ... - Unpacking libcoordgen3:amd64 (3.0.1-1) ... - Selecting previously unselected package libgfortran5:amd64. - Preparing to unpack .../18-libgfortran5_12.2.0-14_amd64.deb ... - Unpacking libgfortran5:amd64 (12.2.0-14) ... - Selecting previously unselected package libicu72:amd64. - Preparing to unpack .../19-libicu72_72.1-3_amd64.deb ... - Unpacking libicu72:amd64 (72.1-3) ... - Selecting previously unselected package libinchi1. - Preparing to unpack .../20-libinchi1_1.03+dfsg-4+b2_amd64.deb ... - Unpacking libinchi1 (1.03+dfsg-4+b2) ... - Selecting previously unselected package liblapack3:amd64. - Preparing to unpack .../21-liblapack3_3.11.0-2_amd64.deb ... - Unpacking liblapack3:amd64 (3.11.0-2) ... - Selecting previously unselected package libmaeparser1:amd64. - Preparing to unpack .../22-libmaeparser1_1.3.0-1_amd64.deb ... - Unpacking libmaeparser1:amd64 (1.3.0-1) ... - Selecting previously unselected package libxml2:amd64. - Preparing to unpack .../23-libxml2_2.9.14+dfsg-1.3~deb12u1_amd64.deb ... - Unpacking libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... - Selecting previously unselected package libopenbabel7. - Preparing to unpack .../24-libopenbabel7_3.1.1+dfsg-9+b3_amd64.deb ... - Unpacking libopenbabel7 (3.1.1+dfsg-9+b3) ... - Selecting previously unselected package libopenbabel-dev. - Preparing to unpack .../25-libopenbabel-dev_3.1.1+dfsg-9+b3_amd64.deb ... - Unpacking libopenbabel-dev (3.1.1+dfsg-9+b3) ... - Selecting previously unselected package libpkgconf3:amd64. - Preparing to unpack .../26-libpkgconf3_1.8.1-1_amd64.deb ... - Unpacking libpkgconf3:amd64 (1.8.1-1) ... - Selecting previously unselected package libpython3.11:amd64. - Preparing to unpack .../27-libpython3.11_3.11.2-6_amd64.deb ... - Unpacking libpython3.11:amd64 (3.11.2-6) ... - Selecting previously unselected package librdkit1. - Preparing to unpack .../28-librdkit1_202209.3-1_amd64.deb ... - Unpacking librdkit1 (202209.3-1) ... - Selecting previously unselected package librdkit-dev. - Preparing to unpack .../29-librdkit-dev_202209.3-1_amd64.deb ... - Unpacking librdkit-dev (202209.3-1) ... - Selecting previously unselected package pkgconf-bin. - Preparing to unpack .../30-pkgconf-bin_1.8.1-1_amd64.deb ... - Unpacking pkgconf-bin (1.8.1-1) ... - Selecting previously unselected package pkgconf:amd64. - Preparing to unpack .../31-pkgconf_1.8.1-1_amd64.deb ... - Unpacking pkgconf:amd64 (1.8.1-1) ... - Selecting previously unselected package pkg-config:amd64. - Preparing to unpack .../32-pkg-config_1.8.1-1_amd64.deb ... - Unpacking pkg-config:amd64 (1.8.1-1) ... - Selecting previously unselected package python3-pkg-resources. - Preparing to unpack .../33-python3-pkg-resources_66.1.1-1_all.deb ... - Unpacking python3-pkg-resources (66.1.1-1) ... - Selecting previously unselected package python3-numpy. - Preparing to unpack .../34-python3-numpy_1%3a1.24.2-1_amd64.deb ... - Unpacking python3-numpy (1:1.24.2-1) ... - Selecting previously unselected package rdkit-data. - Preparing to unpack .../35-rdkit-data_202209.3-1_all.deb ... - Unpacking rdkit-data (202209.3-1) ... - Selecting previously unselected package python3-rdkit. - Preparing to unpack .../36-python3-rdkit_202209.3-1_amd64.deb ... - Unpacking python3-rdkit (202209.3-1) ... - Selecting previously unselected package zlib1g-dev:amd64. - Preparing to unpack .../37-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... - Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... - Setting up media-types (10.0.0) ... - Setting up libpixman-1-0:amd64 (0.42.2-1) ... - Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... - Setting up libicu72:amd64 (72.1-3) ... - Setting up libxrender1:amd64 (1:0.9.10-1.1) ... - Setting up libxcb-render0:amd64 (1.15-1) ... - Setting up libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ... - Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... - Setting up fonts-freefont-ttf (20120503-10) ... - Setting up m4 (1.4.19-3) ... - Setting up libxcb-shm0:amd64 (1.15-1) ... - Setting up rdkit-data (202209.3-1) ... - Setting up libcairo2:amd64 (1.16.0-7) ... - Setting up libmaeparser1:amd64 (1.3.0-1) ... - Setting up autotools-dev (20220109.1) ... - Setting up libblas3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode - Setting up libpkgconf3:amd64 (1.8.1-1) ... - Setting up pkgconf-bin (1.8.1-1) ... - Setting up libgfortran5:amd64 (12.2.0-14) ... - Setting up autoconf (2.71-3) ... - Setting up libboost-serialization1.74.0:amd64 (1.74.0+ds1-21) ... - Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... - Setting up libboost-dev:amd64 (1.74.0.3) ... - Setting up libcoordgen3:amd64 (3.0.1-1) ... - Setting up libboost-python1.74.0 (1.74.0+ds1-21) ... - Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... - Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... - Setting up libinchi1 (1.03+dfsg-4+b2) ... - Setting up automake (1:1.16.5-1.3) ... - update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode - Setting up python3.11 (3.11.2-6) ... - Setting up liblapack3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode - Setting up libpython3.11:amd64 (3.11.2-6) ... - Setting up librdkit1 (202209.3-1) ... - Setting up libopenbabel7 (3.1.1+dfsg-9+b3) ... - Setting up python3 (3.11.2-1+b1) ... - running python rtupdate hooks for python3.11... - running python post-rtupdate hooks for python3.11... - Setting up pkgconf:amd64 (1.8.1-1) ... - Setting up libopenbabel-dev (3.1.1+dfsg-9+b3) ... - Setting up librdkit-dev (202209.3-1) ... - Setting up pkg-config:amd64 (1.8.1-1) ... - Setting up python3-pkg-resources (66.1.1-1) ... - Setting up python3-numpy (1:1.24.2-1) ... - Setting up python3-rdkit (202209.3-1) ... - Processing triggers for libc-bin (2.36-9+deb12u4) ... <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> Processing 2/105: Processing 3/105: Processing 4/105: Processing 5/105: -> installed base-bytes.base Processing 6/105: -> retrieved batteries.3.8.0 (cached) Processing 7/105: -> retrieved bitv.1.6 (cached) Processing 8/105: Processing 9/105: Processing 10/105: Processing 11/105: Processing 12/105: Processing 13/105: Processing 14/105: Processing 15/105: Processing 16/105: Processing 17/105: [bitv: dune build] Processing 18/105: [bitv: dune build] Processing 19/105: [bitv: dune build] [conf-pkg-config: pkg-config] Processing 20/105: [bitv: dune build] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] Processing 21/105: [bitv: dune build] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] Processing 22/105: [bitv: dune build] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> installed conf-boost.1 Processing 23/105: [bitv: dune build] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> retrieved camlp-streams.5.0.1 (cached) Processing 24/105: [bitv: dune build] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] Processing 25/105: [bitv: dune build] [camlp-streams: dune build] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> retrieved camlzip.1.11 (cached) Processing 26/105: [bitv: dune build] [camlp-streams: dune build] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> retrieved cpm.12.2.0 (cached) Processing 27/105: [bitv: dune build] [camlp-streams: dune build] [conf-pkg-config: pkg-config] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] - usage: pkgconf [OPTIONS] [LIBRARIES] - - basic options: - - --help this message - --about print pkgconf version and license to stdout - --version print supported pkg-config version to stdout - --atleast-pkgconfig-version check whether or not pkgconf is compatible - with a specified pkg-config version - --errors-to-stdout print all errors on stdout instead of stderr - --print-errors ensure all errors are printed - --short-errors be less verbose about some errors - --silence-errors explicitly be silent about errors - --list-all list all known packages - --list-package-names list all known package names - --simulate simulate walking the calculated dependency graph - --no-cache do not cache already seen packages when - walking the dependency graph - --log-file=filename write an audit log to a specified file - --with-path=path adds a directory to the search path - --define-prefix override the prefix variable with one that is guessed based on - the location of the .pc file - --dont-define-prefix do not override the prefix variable under any circumstances - --prefix-variable=varname sets the name of the variable that pkgconf considers - to be the package prefix - --relocate=path relocates a path and exits (mostly for testsuite) - --dont-relocate-paths disables path relocation support - - cross-compilation personality support: - - --personality=triplet|filename sets the personality to 'triplet' or a file named 'filename' - --dump-personality dumps details concerning selected personality - - checking specific pkg-config database entries: - - --atleast-version require a specific version of a module - --exact-version require an exact version of a module - --max-version require a maximum version of a module - --exists check whether or not a module exists - --uninstalled check whether or not an uninstalled module will be used - --no-uninstalled never use uninstalled modules when satisfying dependencies - --no-provides do not use 'provides' rules to resolve dependencies - --maximum-traverse-depth maximum allowed depth for dependency graph - --static be more aggressive when computing dependency graph - (for static linking) - --shared use a simplified dependency graph (usually default) - --pure optimize a static dependency graph as if it were a normal - dependency graph - --env-only look only for package entries in PKG_CONFIG_PATH - --ignore-conflicts ignore 'conflicts' rules in modules - --validate validate specific .pc files for correctness - - querying specific pkg-config database fields: - - --define-variable=varname=value define variable 'varname' as 'value' - --variable=varname print specified variable entry to stdout - --cflags print required CFLAGS to stdout - --cflags-only-I print required include-dir CFLAGS to stdout - --cflags-only-other print required non-include-dir CFLAGS to stdout - --libs print required linker flags to stdout - --libs-only-L print required LDPATH linker flags to stdout - --libs-only-l print required LIBNAME linker flags to stdout - --libs-only-other print required other linker flags to stdout - --print-requires print required dependency frameworks to stdout - --print-requires-private print required dependency frameworks for static - linking to stdout - --print-provides print provided dependencies to stdout - --print-variables print all known variables in module to stdout - --digraph print entire dependency graph in graphviz 'dot' format - --keep-system-cflags keep -I/usr/include entries in cflags output - --keep-system-libs keep -L/lib:/lib/i386-linux-gnu:/lib/x86_64-linux-gnu:/lib/x86_64-linux-gnux32:/lib32:/libx32:/usr/lib:/usr/lib/i386-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnux32:/usr/lib32:/usr/libx32 entries in libs output - --path show the exact filenames for any matching .pc files - --modversion print the specified module's version to stdout - --internal-cflags do not filter 'internal' cflags from output - - filtering output: - - --msvc-syntax print translatable fragments in MSVC syntax - --fragment-filter=types filter output fragments to the specified types - - report bugs to <https://github.com/pkgconf/pkgconf/issues/new>. -> compiled conf-pkg-config.3 Processing 27/105: [bitv: dune build] [camlp-streams: dune build] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] -> installed conf-pkg-config.3 Processing 28/105: [bitv: dune build] [camlp-streams: dune build] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] Processing 29/105: [bitv: dune build] [camlp-streams: dune build] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] Processing 30/105: [bitv: dune build] [camlp-streams: dune build] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-python-3: python3 test.py] [conf-rdkit: sh] [conf-which: which which] [conf-zlib: pkg-config zlib] - python-3 OK -> compiled conf-python-3.9.0.0 Processing 30/105: [bitv: dune build] [camlp-streams: dune build] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: sh] [conf-which: which which] [conf-zlib: pkg-config zlib] -> installed conf-python-3.9.0.0 Processing 31/105: [bitv: dune build] [camlp-streams: dune build] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: sh] [conf-which: which which] [conf-zlib: pkg-config zlib] - /usr/bin/which -> compiled conf-which.1 Processing 31/105: [bitv: dune build] [camlp-streams: dune build] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: sh] [conf-zlib: pkg-config zlib] -> installed conf-which.1 Processing 32/105: [bitv: dune build] [camlp-streams: dune build] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: sh] [conf-zlib: pkg-config zlib] Processing 33/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: sh] [conf-zlib: pkg-config zlib] -> retrieved cpu.2.0.0 (cached) Processing 34/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: sh] [conf-zlib: pkg-config zlib] Processing 34/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: ./test] [conf-zlib: pkg-config zlib] -> retrieved csexp.1.5.2 (cached) Processing 35/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: ./test] [conf-zlib: pkg-config zlib] Processing 36/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: ./test] [conf-zlib: pkg-config zlib] [csexp: dune build] -> retrieved dokeysto.4.0.1 (cached) Processing 37/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-openbabel: sh pkg-config openbabel-2.0 || pkg-config openbabel-3] [conf-rdkit: ./test] [conf-zlib: pkg-config zlib] [csexp: dune build] -> compiled conf-openbabel.0.1 Processing 37/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-rdkit: ./test] [conf-zlib: pkg-config zlib] [csexp: dune build] -> installed conf-openbabel.0.1 Processing 38/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-rdkit: ./test] [conf-zlib: pkg-config zlib] [csexp: dune build] -> compiled conf-zlib.1 Processing 38/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-rdkit: ./test] [csexp: dune build] -> installed conf-zlib.1 Processing 39/105: [bitv: dune build] [camlp-streams: dune build] [conf-autoconf: which autoconf] [conf-rdkit: ./test] [csexp: dune build] Processing 40/105: [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [conf-autoconf: which autoconf] [conf-rdkit: ./test] [csexp: dune build] - /usr/bin/autoconf -> compiled conf-autoconf.0.1 Processing 40/105: [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [conf-rdkit: ./test] [csexp: dune build] -> installed conf-autoconf.0.1 Processing 41/105: [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [conf-rdkit: ./test] [csexp: dune build] Processing 42/105: [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] -> retrieved dolog.6.0.0 (cached) Processing 43/105: [lbvs_consent.2.2.0: http] [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] Processing 44/105: [lbvs_consent.2.2.0: http] [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [conf-rdkit: ./test] [cpu: autoconf] [csexp: dune build] [dolog: dune build] - 2022.09.3 -> compiled conf-rdkit.1 Processing 44/105: [lbvs_consent.2.2.0: http] [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] -> installed conf-rdkit.1 Processing 45/105: [lbvs_consent.2.2.0: http] [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] -> retrieved extunix.0.4.1 (cached) Processing 46/105: [lbvs_consent.2.2.0: http] [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] -> retrieved minicli.5.0.2 (cached) Processing 47/105: [lbvs_consent.2.2.0: http] [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] Processing 48/105: [lbvs_consent.2.2.0: http] [bitv: dune build] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] -> compiled bitv.1.6 Processing 48/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] -> installed bitv.1.6 Processing 49/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] -> retrieved num.1.5 (cached) Processing 50/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] Processing 51/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-modern] -> retrieved ocaml-compiler-libs.v0.12.4 (cached) Processing 52/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-modern] Processing 53/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> retrieved ounit2.2.2.7 (cached) Processing 54/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> retrieved parany.14.0.1 (cached) Processing 55/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> retrieved ppx_derivers.1.2.1 (cached) Processing 56/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] Processing 57/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [csexp: dune build] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> compiled csexp.1.5.2 Processing 57/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> installed csexp.1.5.2 Processing 58/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> retrieved ppxlib.0.32.1~5.2preview (cached) Processing 59/105: [lbvs_consent.2.2.0: http] [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] Processing 59/105: [camlp-streams: dune build] [camlzip: make all] [cpu: autoconf] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] - configure.ac:8: warning: The macro `AC_HEADER_STDC' is obsolete. - configure.ac:8: You should run autoupdate. - ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... - configure.ac:8: the top level Processing 59/105: [camlp-streams: dune build] [camlzip: make all] [cpu: autoheader] [dolog: dune build] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> compiled dolog.6.0.0 Processing 59/105: [camlp-streams: dune build] [camlzip: make all] [cpu: autoheader] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> installed dolog.6.0.0 Processing 60/105: [camlp-streams: dune build] [camlzip: make all] [cpu: autoheader] [minicli: dune build] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> compiled minicli.5.0.2 Processing 60/105: [camlp-streams: dune build] [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> installed minicli.5.0.2 Processing 61/105: [camlp-streams: dune build] [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> retrieved qcheck.0.21.3 (cached) Processing 62/105: [camlp-streams: dune build] [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [ppx_derivers: dune build] -> compiled ppx_derivers.1.2.1 Processing 62/105: [camlp-streams: dune build] [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> installed ppx_derivers.1.2.1 Processing 63/105: [camlp-streams: dune build] [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> compiled camlp-streams.5.0.1 Processing 63/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> installed camlp-streams.5.0.1 Processing 64/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> retrieved lbvs_consent.2.2.0 (https://github.com/UnixJunkie/consent/archive/v2.2.0.tar.gz) Processing 65/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] -> retrieved qcheck-core.0.21.3 (cached) Processing 66/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] Processing 67/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] Processing 68/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] Processing 69/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] -> installed seq.base Processing 70/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] -> retrieved qcheck-ounit.0.21.3 (cached) Processing 71/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] -> retrieved sexplib0.v0.16.0 (cached) Processing 72/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] Processing 73/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] [sexplib0: dune build] -> retrieved stdlib-shims.0.3.0 (cached) Processing 74/105: [camlzip: make all] [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] [sexplib0: dune build] [stdlib-shims: dune build] - ocamlfind ocamlc -g -safe-string -bin-annot -c -ccopt -g zlibstubs.c - ocamlfind ocamlmklib -oc camlzip zlibstubs.o -lz - ocamlfind ocamlc -g -safe-string -bin-annot -c zlib.mli - ocamlfind ocamlc -g -safe-string -bin-annot -c zlib.ml - ocamlfind ocamlc -g -safe-string -bin-annot -c zip.mli - ocamlfind ocamlc -g -safe-string -bin-annot -c zip.ml - File "_none_", line 1: - Alert ocaml_deprecated_auto_include: - OCaml's lib directory layout changed in 5.0. The unix subdirectory has been - automatically added to the search path, but you should add -I +unix to the - command-line to silence this alert (e.g. by adding unix to the list of - libraries in your dune file, or adding use_unix to your _tags file for - ocamlbuild, or using -package unix for ocamlfind). - ocamlfind ocamlc -g -safe-string -bin-annot -c gzip.mli - ocamlfind ocamlc -g -safe-string -bin-annot -c gzip.ml - ocamlfind ocamlmklib -o zip -oc camlzip zlib.cmo zip.cmo gzip.cmo -lz - ocamlfind ocamlopt -safe-string -c zlib.ml - ocamlfind ocamlopt -safe-string -c zip.ml - File "_none_", line 1: - Alert ocaml_deprecated_auto_include: - OCaml's lib directory layout changed in 5.0. The unix subdirectory has been - automatically added to the search path, but you should add -I +unix to the - command-line to silence this alert (e.g. by adding unix to the list of - libraries in your dune file, or adding use_unix to your _tags file for - ocamlbuild, or using -package unix for ocamlfind). - ocamlfind ocamlopt -safe-string -c gzip.ml - ocamlfind ocamlmklib -o zip -oc camlzip zlib.cmx zip.cmx gzip.cmx -lz - ocamlfind ocamlopt -safe-string -shared -linkall -I ./ -o zip.cmxs zip.cmxa libcamlzip.a -> compiled camlzip.1.11 Processing 74/105: [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] [sexplib0: dune build] [stdlib-shims: dune build] Processing 75/105: [cpu: autoheader] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] [sexplib0: dune build] [stdlib-shims: dune build] [camlzip: make install] -> retrieved dune-configurator.3.15.0 (cached) Processing 76/105: [cpu: autoheader] [dune-configurator: rm] [num: make opam-modern] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] [sexplib0: dune build] [stdlib-shims: dune build] [camlzip: make install] - /usr/bin/make -C src all - make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/num.1.5/src' - ocamlc -ccopt -DBNG_ARCH_amd64 -c bng.c - ocamlc -ccopt -DBNG_ARCH_amd64 -c nat_stubs.c - ocamlmklib -oc nums bng.o nat_stubs.o - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml - ocamlmklib -o nums -oc nums -linkall int_misc.cmo nat.cmo big_int.cmo arith_flags.cmo ratio.cmo num.cmo arith_status.cmo - cp ../toplevel/num_top_printers.mli ../toplevel/num_top.mli ../toplevel/num_top_printers.ml ../toplevel/num_top.ml . - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top_printers.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.mli - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num_top.ml - ocamlc -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -a -o num_top.cma num_top_printers.cmo num_top.cmo - echo 'version = "1.6~dev"' > META.top - cat META.num-top.in >> META.top - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c int_misc.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c nat.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c big_int.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_flags.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c ratio.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c num.ml - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -c arith_status.ml - ocamlmklib -o nums -oc nums -linkall int_misc.cmx nat.cmx big_int.cmx arith_flags.cmx ratio.cmx num.cmx arith_status.cmx - ocamlopt -w +a-4-9-41-42-44-45-48 -bin-annot -g -safe-string -strict-sequence -strict-formats -I +compiler-libs -I . -shared -o nums.cmxs nums.cmxa - make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/num.1.5/src' - cp src/num-modern.install num.install -> compiled num.1.5 Processing 76/105: [cpu: autoheader] [dune-configurator: rm] [ocaml-compiler-libs: dune build] [qcheck-core: dune build] [sexplib0: dune build] [stdlib-shims: dune build] [camlzip: make install] -> compiled ocaml-compiler-libs.v0.12.4 Processing 76/105: [cpu: autoheader] [dune-configurator: rm] [qcheck-core: dune build] [sexplib0: dune build] [stdlib-shims: dune build] [camlzip: make install] Processing 76/105: [cpu: ./configure] [dune-configurator: rm] [qcheck-core: dune build] [sexplib0: dune build] [stdlib-shims: dune build] [camlzip: make install] - (cd _build/default && /home/opam/.opam/5.1/bin/ocamlc.opt -w -40 -w +a-4-42-44-48-50-58-32-60@8 -safe-string -g -bin-annot -I src/core/.qcheck_core.objs/byte -I /home/opam/.opam/5.1/lib/ocaml/unix -intf-suffix .ml -no-alias-deps -o src/core/.qcheck_core.objs/byte/qCheck2.cmo -c -impl src/core/QCheck2.ml) - File "src/core/QCheck2.ml", line 1172, characters 2-20: - 1172 | fun_gen: 'b Gen.t; (** How to generate output values *) - ^^^^^^^^^^^^^^^^^^ - Warning 69 [unused-field]: record field fun_gen is never read. - (However, this field is used to build or mutate values.) - - File "src/core/QCheck2.ml", line 1570, characters 4-33: - 1570 | mutable res: 'a TestResult.t; - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - Warning 69 [unused-field]: mutable record field res is never mutated. - (cd _build/default && /home/opam/.opam/5.1/bin/ocamlopt.opt -w -40 -w +a-4-42-44-48-50-58-32-60@8 -safe-string -g -I src/core/.qcheck_core.objs/byte -I src/core/.qcheck_core.objs/native -I /home/opam/.opam/5.1/lib/ocaml/unix -intf-suffix .ml -no-alias-deps -o src/core/.qcheck_core.objs/native/qCheck2.cmx -c -impl src/core/QCheck2.ml) - File "src/core/QCheck2.ml", line 1172, characters 2-20: - 1172 | fun_gen: 'b Gen.t; (** How to generate output values *) - ^^^^^^^^^^^^^^^^^^ - Warning 69 [unused-field]: record field fun_gen is never read. - (However, this field is used to build or mutate values.) - - File "src/core/QCheck2.ml", line 1570, characters 4-33: - 1570 | mutable res: 'a TestResult.t; - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - Warning 69 [unused-field]: mutable record field res is never mutated. -> compiled qcheck-core.0.21.3 Processing 76/105: [cpu: ./configure] [dune-configurator: rm] [sexplib0: dune build] [stdlib-shims: dune build] [camlzip: make install] -> retrieved vpt.5.0.0 (cached) Processing 77/105: [cpu: ./configure] [dune-configurator: rm] [sexplib0: dune build] [stdlib-shims: dune build] [vpt: dune build] [camlzip: make install] -> compiled sexplib0.v0.16.0 Processing 77/105: [cpu: ./configure] [dune-configurator: rm] [stdlib-shims: dune build] [vpt: dune build] [camlzip: make install] -> compiled stdlib-shims.0.3.0 Processing 77/105: [cpu: ./configure] [dune-configurator: rm] [vpt: dune build] [camlzip: make install] - cp META-zip META && \ - ocamlfind install zip META *.cma *.a *.mli *.cmi *.cmti *.cmt gzip.cmx zip.cmx zlib.cmx zip.cmxa zip.cmxs dllcamlzip.so && \ - rm META - Installed /home/opam/.opam/5.1/lib/zip/zip.cmxs - Installed /home/opam/.opam/5.1/lib/zip/zip.cmxa - Installed /home/opam/.opam/5.1/lib/zip/zlib.cmx - Installed /home/opam/.opam/5.1/lib/zip/zip.cmx - Installed /home/opam/.opam/5.1/lib/zip/gzip.cmx - Installed /home/opam/.opam/5.1/lib/zip/zlib.cmt - Installed /home/opam/.opam/5.1/lib/zip/zip.cmt - Installed /home/opam/.opam/5.1/lib/zip/gzip.cmt - Installed /home/opam/.opam/5.1/lib/zip/zlib.cmti - Installed /home/opam/.opam/5.1/lib/zip/zip.cmti - Installed /home/opam/.opam/5.1/lib/zip/gzip.cmti - Installed /home/opam/.opam/5.1/lib/zip/zlib.cmi - Installed /home/opam/.opam/5.1/lib/zip/zip.cmi - Installed /home/opam/.opam/5.1/lib/zip/gzip.cmi - Installed /home/opam/.opam/5.1/lib/zip/zlib.mli - Installed /home/opam/.opam/5.1/lib/zip/zip.mli - Installed /home/opam/.opam/5.1/lib/zip/gzip.mli - Installed /home/opam/.opam/5.1/lib/zip/zip.a - Installed /home/opam/.opam/5.1/lib/zip/libcamlzip.a - Installed /home/opam/.opam/5.1/lib/zip/zip.cma - Installed /home/opam/.opam/5.1/lib/stublibs/dllcamlzip.so - Installed /home/opam/.opam/5.1/lib/stublibs/dllcamlzip.so.owner - ocamlfind: [WARNING] You have installed DLLs but the directory /home/opam/.opam/5.1/lib/stublibs is not mentioned in ld.conf - Installed /home/opam/.opam/5.1/lib/zip/META - cp META-camlzip META && \ - ocamlfind install camlzip META && \ - rm META - Installed /home/opam/.opam/5.1/lib/camlzip/META -> installed camlzip.1.11 Processing 77/105: [cpu: ./configure] [dune-configurator: rm] [vpt: dune build] -> installed num.1.5 Processing 78/105: [cpu: ./configure] [dune-configurator: rm] [vpt: dune build] Processing 79/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [vpt: dune build] -> installed ocaml-compiler-libs.v0.12.4 Processing 80/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [vpt: dune build] -> installed qcheck-core.0.21.3 Processing 81/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [vpt: dune build] -> installed sexplib0.v0.16.0 Processing 82/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [vpt: dune build] -> installed stdlib-shims.0.3.0 Processing 83/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [vpt: dune build] Processing 84/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [ounit2: dune build] [vpt: dune build] Processing 85/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [ounit2: dune build] [ppxlib: dune build] [vpt: dune build] -> compiled vpt.5.0.0 Processing 85/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [ounit2: dune build] [ppxlib: dune build] -> installed vpt.5.0.0 Processing 86/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: rm] [ounit2: dune build] [ppxlib: dune build] Processing 86/105: [batteries: dune build] [cpu: ./configure] [dune-configurator: dune build] [ounit2: dune build] [ppxlib: dune build] - checking for ocamlc... ocamlc - OCaml version is 5.1.1 - OCaml library path is /home/opam/.opam/5.1/lib/ocaml - checking for ocamlopt... ocamlopt - checking for ocamlc.opt... ocamlc.opt - checking for ocamlopt.opt... ocamlopt.opt - checking for dynlink.cmxa... no - checking for ocaml... ocaml - checking for ocamldep... ocamldep - checking for ocamlmktop... ocamlmktop - checking for ocamlmklib... ocamlmklib - checking for ocamldoc... ocamldoc - checking for ocamlbuild... no - checking for gcc... gcc - checking whether the C compiler works... yes - checking for C compiler default output file name... a.out - checking for suffix of executables... - checking whether we are cross compiling... no - checking for suffix of object files... o - checking whether the compiler supports GNU C... yes - checking whether gcc accepts -g... yes - checking for gcc option to enable C11 features... none needed - checking for stdio.h... yes - checking for stdlib.h... yes - checking for string.h... yes - checking for inttypes.h... yes - checking for stdint.h... yes - checking for strings.h... yes - checking for sys/stat.h... yes - checking for sys/types.h... yes - checking for unistd.h... yes - checking for grep that handles long lines and -e... /usr/bin/grep - checking for egrep... /usr/bin/grep -E - checking for sched.h... yes - checking for gcc options needed to detect all undeclared functions... none needed - checking whether sched_setaffinity is declared... yes - checking for mach/thread_policy.h... no - checking whether thread_policy_set is declared... no - configure: creating ./config.status - config.status: creating src/config.h Processing 86/105: [batteries: dune build] [cpu: dune build] [dune-configurator: dune build] [ounit2: dune build] [ppxlib: dune build] -> compiled ounit2.2.2.7 Processing 86/105: [batteries: dune build] [cpu: dune build] [dune-configurator: dune build] [ppxlib: dune build] -> installed ounit2.2.2.7 Processing 87/105: [batteries: dune build] [cpu: dune build] [dune-configurator: dune build] [ppxlib: dune build] Processing 88/105: [batteries: dune build] [cpu: dune build] [dune-configurator: dune build] [ppxlib: dune build] [qcheck-ounit: dune build] -> compiled cpu.2.0.0 Processing 88/105: [batteries: dune build] [dune-configurator: dune build] [ppxlib: dune build] [qcheck-ounit: dune build] -> installed cpu.2.0.0 Processing 89/105: [batteries: dune build] [dune-configurator: dune build] [ppxlib: dune build] [qcheck-ounit: dune build] Processing 90/105: [batteries: dune build] [dune-configurator: dune build] [parany: dune build] [ppxlib: dune build] [qcheck-ounit: dune build] -> compiled dune-configurator.3.15.0 Processing 90/105: [batteries: dune build] [parany: dune build] [ppxlib: dune build] [qcheck-ounit: dune build] -> installed dune-configurator.3.15.0 Processing 91/105: [batteries: dune build] [parany: dune build] [ppxlib: dune build] [qcheck-ounit: dune build] -> compiled qcheck-ounit.0.21.3 Processing 91/105: [batteries: dune build] [parany: dune build] [ppxlib: dune build] -> installed qcheck-ounit.0.21.3 Processing 92/105: [batteries: dune build] [parany: dune build] [ppxlib: dune build] Processing 93/105: [batteries: dune build] [parany: dune build] [ppxlib: dune build] [qcheck: dune build] -> compiled parany.14.0.1 Processing 93/105: [batteries: dune build] [ppxlib: dune build] [qcheck: dune build] -> installed parany.14.0.1 Processing 94/105: [batteries: dune build] [ppxlib: dune build] [qcheck: dune build] -> compiled qcheck.0.21.3 Processing 94/105: [batteries: dune build] [ppxlib: dune build] -> installed qcheck.0.21.3 Processing 95/105: [batteries: dune build] [ppxlib: dune build] -> compiled batteries.3.8.0 Processing 95/105: [ppxlib: dune build] -> installed batteries.3.8.0 Processing 96/105: [ppxlib: dune build] Processing 97/105: [cpm: dune build] [ppxlib: dune build] -> compiled cpm.12.2.0 Processing 97/105: [ppxlib: dune build] -> installed cpm.12.2.0 Processing 98/105: [ppxlib: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "ppxlib" "-j" "31" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/ppxlib.0.32.1~5.2preview) -> compiled ppxlib.0.32.1~5.2preview -> installed ppxlib.0.32.1~5.2preview Processing 100/105: [extunix: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "extunix" "-j" "31" "@install" (CWD=/home/opam/.opam/5.1/.opam-switch/build/extunix.0.4.1) - (cd _build/default/src && ../discover/discover.exe) - checking EVENTFD.............ok - checking ATFILE..............ok - checking DIRFD...............ok - checking STATVFS.............ok - checking FSTATVFS............ok - checking SIOCGIFCONF.........ok - checking IFADDRS.............ok - checking INET_NTOA...........ok - checking INET_NTOP...........ok - checking UNAME...............ok - checking FADVISE.............ok - checking FALLOCATE...........ok - checking TTY_IOCTL...........ok - checking TTYNAME.............ok - checking CTERMID.............ok - checking GETTID..............ok - checking PGID................ok - checking SETREUID............ok - checking FSYNC...............ok - checking FDATASYNC...........ok - checking SYNC................ok - checking SYNCFS..............ok - checking REALPATH............ok - checking SIGNALFD............ok - checking PTRACE..............ok - checking RESOURCE............ok - checking MLOCKALL............ok - checking STRPTIME............ok - checking STRTIME.............ok - checking TIMEZONE............ok - checking TIMEGM..............ok - checking PTS.................ok - checking FCNTL...............ok - checking TCPGRP..............ok - checking EXECINFO............ok - checking SETENV..............ok - checking CLEARENV............ok - checking MKDTEMP.............ok - checking MALLOC_INFO.........ok - checking MALLOC_STATS........ok - checking MEMALIGN............ok - checking ENDIAN..............ok - checking READ_CREDENTIALS....ok - checking FEXECVE.............ok - checking SENDMSG.............ok - checking PREAD...............ok - checking PWRITE..............ok - checking READ................ok - checking WRITE...............ok - checking MKSTEMPS............ok - checking MKOSTEMPS...........ok - checking SETRESUID...........ok - checking SYSCONF.............ok - checking SPLICE..............ok - checking TEE.................ok - checking VMSPLICE............ok - checking SOCKOPT.............ok - checking TCP_KEEPIDLE........ok - checking TCP_KEEPCNT.........ok - checking TCP_KEEPINTVL.......ok - checking SO_REUSEPORT........ok - checking POLL................ok - checking SYSINFO.............ok - checking MCHECK..............ok - checking MOUNT...............ok - checking UNSHARE.............ok - checking CHROOT..............ok - checking SYSLOG..............ok - (cd _build/default/src && /usr/bin/gcc -O2 -fno-strict-aliasing -fwrapv -pthread -fPIC -D_FILE_OFFSET_BITS=64 -g -I /home/opam/.opam/5.1/lib/ocaml -I /home/opam/.opam/5.1/lib/bytes -I /home/opam/.opam/5.1/lib/ocaml/unix -o splice.o -c splice.c) - splice.c: In function 'get_offset': - splice.c:20:33: warning: return discards 'volatile' qualifier from pointer target type [-Wdiscarded-qualifiers] - 20 | return (Is_long(v_off) ? NULL : &(Field(v_off, 0))); - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -> compiled extunix.0.4.1 -> installed extunix.0.4.1 Processing 102/105: [dokeysto: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "dokeysto" "-j" "31" (CWD=/home/opam/.opam/5.1/.opam-switch/build/dokeysto.4.0.1) -> compiled dokeysto.4.0.1 -> installed dokeysto.4.0.1 [lbvs_consent: patch] applying makefile.patch Processing 104/105: [lbvs_consent: patch] Processing 104/105: [lbvs_consent: make obmaccs] + /usr/bin/make "obmaccs" (CWD=/home/opam/.opam/5.1/.opam-switch/build/lbvs_consent.2.2.0) - cd src; make - make[1]: Entering directory '/home/opam/.opam/5.1/.opam-switch/build/lbvs_consent.2.2.0/src' - c++ -W -Wall `pkg-config --silence-errors --cflags openbabel-2.0 || pkg-config --cflags openbabel-3` ob_maccs.cpp \ - -o lbvs_consent_ob_maccs `pkg-config --silence-errors --libs openbabel-2.0 || pkg-config --libs openbabel-3` -Wl,-R/usr/lib - In file included from /usr/include/openbabel3/openbabel/fingerprint.h:28, - from ob_maccs.cpp:1: - /usr/include/openbabel3/openbabel/plugin.h:41:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations] - 41 | struct OBERROR CharPtrLess : public std::binary_function<const char*,const char*, bool> - | ^~~~~~~~~~~~~~~ - In file included from /usr/include/c++/12/bits/stl_tree.h:65, - from /usr/include/c++/12/map:60, - from /usr/include/openbabel3/openbabel/fingerprint.h:23: - /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here - 131 | struct binary_function - | ^~~~~~~~~~~~~~~ - In file included from /usr/include/openbabel3/openbabel/mol.h:48, - from ob_maccs.cpp:2: - /usr/include/openbabel3/openbabel/base.h: In member function 'virtual const char* OpenBabel::OBBase::GetTitle(bool) const': - /usr/include/openbabel3/openbabel/base.h:286:49: warning: unused parameter 'replaceNewlines' [-Wunused-parameter] - 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} - | ^ - /usr/include/openbabel3/openbabel/base.h:37:20: note: in definition of macro 'UNUSED' - 37 | # define UNUSED(x) x - | ^ - make[1]: Leaving directory '/home/opam/.opam/5.1/.opam-switch/build/lbvs_consent.2.2.0/src' Processing 104/105: [lbvs_consent: dune build] + /home/opam/.opam/5.1/bin/dune "build" "-p" "lbvs_consent" "-j" "31" (CWD=/home/opam/.opam/5.1/.opam-switch/build/lbvs_consent.2.2.0) -> compiled lbvs_consent.2.2.0 Processing 105/105: [lbvs_consent: cp] + /usr/bin/cp "bin/lbvs_consent_ecfp4.py" "/home/opam/.opam/5.1/bin/lbvs_consent_ecfp4.py" (CWD=/home/opam/.opam/5.1/.opam-switch/build/lbvs_consent.2.2.0) + /usr/bin/cp "src/lbvs_consent_ob_maccs" "/home/opam/.opam/5.1/bin/lbvs_consent_ob_maccs" (CWD=/home/opam/.opam/5.1/.opam-switch/build/lbvs_consent.2.2.0) -> installed lbvs_consent.2.2.0 Done. # Run eval $(opam env) to update the current shell environment 2024-04-22 11:12.42 ---> saved as "8219343f36e7640e896f38daddb5a056e399321c0d491788d54eee48594653b8" /home/opam: (run (shell "opam exec -- ~/voodoo-prep -u lbvs_consent:cbfa87e43e3cdbd35f00ca58aab32ccb")) 2024-04-22 11:12.43 ---> saved as "b17849f7341ee279d1ef4eb78377ab829f1860c3a3e55a2a0d132eb44be6d262" /home/opam: (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.081914') && (for DATA in prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0,lbvs_consent.2.2.0-cbfa87e43e3cdbd35f00ca58aab32ccb,lbvs_consent.2.2.0; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0,lbvs_consent.2.2.0-cbfa87e43e3cdbd35f00ca58aab32ccb,lbvs_consent.2.2.0; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0,lbvs_consent.2.2.0-cbfa87e43e3cdbd35f00ca58aab32ccb,lbvs_consent.2.2.0; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) 0.081914 prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/doc/ prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/doc/lbvs_consent/ prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/doc/lbvs_consent/LICENSE prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/doc/lbvs_consent/README.md prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/ prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/ prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent.ocamlobjinfo prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/META prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/dune-package prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Atom.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Atom.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Bond.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Bond.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Consensus.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Consensus.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Consent.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Consent.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Fingerprint.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Fingerprint.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Flags.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Flags.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Mini_mol.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Mini_mol.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Mol2.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Mol2.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Molecule.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Molecule.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Mop2d_env.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Mop2d_env.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__MyIntSet.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__MyIntSet.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__MyList.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__MyList.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__MyUtils.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__MyUtils.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Node.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Node.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Pair.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Pair.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Policy.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Policy.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__ROC.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__ROC.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Score.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Score.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Score.cmti prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Score_label.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Score_label.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Sdf.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Sdf.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Smi.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Smi.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Top_keeper.cmi prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/lib/lbvs_consent/lbvs_consent__Top_keeper.cmt prep/universes/cbfa87e43e3cdbd35f00ca58aab32ccb/lbvs_consent/2.2.0/opam Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. HASHES:lbvs_consent.2.2.0-cbfa87e43e3cdbd35f00ca58aab32ccb:25cd786a7a716129e10cb3acbc795e084d9f673803910124491d0163715b93f4 2024-04-22 11:12.44 ---> saved as "74be71b55e8f30b7a51ed8cda4619ed31eaf6807ba4db95235ea55fe66a5c411" Job succeeded 2024-04-22 11:16.59: lbvs_consent.2.2.0-cbfa87e43e3cdbd35f00ca58aab32ccb -> 25cd786a7a716129e10cb3acbc795e084d9f673803910124491d0163715b93f4 2024-04-22 11:16.59: Job succeeded