Build:
- 0
2024-01-29 15:19.06: New job: Voodoo prep orsvm_e1071.3.0.0; 681da539be7e23c22e1f775c7d7e9add 2024-01-29 15:19.06: Waiting for resource in pool OCluster 2024-01-29 19:29.41: Waiting for worker… 2024-01-29 19:29.41: Got resource from pool OCluster 2024-01-29 19:29.41: Using cache hint "docs-universe-prep-4.14.1" To reproduce locally: cat > prep.spec <<'END-OF-SPEC' ((build tools ((from ocaml/opam:debian-12-ocaml-4.14@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")))) (from ocaml/opam:debian-12-ocaml-4.14@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef) (user (uid 1000) (gid 1000)) (workdir /home/opam) (run (shell "sudo chown opam:opam /home/opam")) (run (shell "sudo mkdir /src")) (copy (src packages) (dst /src/packages)) (copy (src repo) (dst /src/repo)) (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) (run (shell "opam repo remove default && opam repo add opam /src")) (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) (comment "no build system") (env DUNE_CACHE disabled) (env DUNE_CACHE_TRANSPORT direct) (env DUNE_CACHE_DUPLICATION copy) (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy orsvm_e1071.3.0.0 jbuilder.1.0+beta20.2 conf-r.1.0.0 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) (run (shell "opam exec -- ~/voodoo-prep -u orsvm_e1071:681da539be7e23c22e1f775c7d7e9add,conf-r:d41d8cd98f00b204e9800998ecf8427e")) (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.361705') && (for DATA in prep/universes/d41d8cd98f00b204e9800998ecf8427e/conf-r/1.0.0,conf-r.1.0.0-d41d8cd98f00b204e9800998ecf8427e,conf-r.1.0.0 prep/universes/681da539be7e23c22e1f775c7d7e9add/orsvm_e1071/3.0.0,orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add,orsvm_e1071.3.0.0; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/d41d8cd98f00b204e9800998ecf8427e/conf-r/1.0.0,conf-r.1.0.0-d41d8cd98f00b204e9800998ecf8427e,conf-r.1.0.0 prep/universes/681da539be7e23c22e1f775c7d7e9add/orsvm_e1071/3.0.0,orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add,orsvm_e1071.3.0.0; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/d41d8cd98f00b204e9800998ecf8427e/conf-r/1.0.0,conf-r.1.0.0-d41d8cd98f00b204e9800998ecf8427e,conf-r.1.0.0 prep/universes/681da539be7e23c22e1f775c7d7e9add/orsvm_e1071/3.0.0,orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add,orsvm_e1071.3.0.0; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) ) END-OF-SPEC ocluster-client submit-obuilder https://github.com/ocaml/opam-repository.git 11ef6c23b449fe8ab683f4f1cb5525e2ff9652ae --local-file prep.spec \ --pool linux-x86_64 --connect ocluster-submission.cap --cache-hint docs-universe-prep-4.14.1 \ --secret ssh_privkey:id_rsa --secret ssh_pubkey:id_rsa.pub--secret ssh_config:ssh_config 2024-01-29 19:29.41: RETRYING: 2024-01-29/151906-voodoo-prep-01f2be Number of retries: 0 (retriable error condition) Building on iphito.caelum.ci.dev All commits already cached HEAD is now at 11ef6c23b4 Add an ocaml-option-no-compression to disable compressed Marshalling (build "tools" …) (from ocaml/opam:debian-12-ocaml-4.14@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef) Unable to find image 'ocaml/opam:debian-12-ocaml-4.14@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef' locally docker.io/ocaml/opam@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef: Pulling from ocaml/opam 82e8c0c7d92b: Pulling fs layer 82e8c0c7d92b: Verifying Checksum 82e8c0c7d92b: Download complete 82e8c0c7d92b: Pull complete Digest: sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef Status: Downloaded newer image for ocaml/opam@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef 2024-01-29 19:24.38 ---> using "1f16aa8fbc1a229ca02cdf7d8b4234eb4608a9074cec5292a9e72517b48fb577" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-01-29 19:24.38 ---> using "258ae3900365106d3b475f7327e1977f1a9ae54d4b6cd6e024f1ed5ef4f3381c" from cache /home/opam: (run (network host) (shell "sudo apt-get update && sudo apt-get install -yy m4 pkg-config")) Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [52.1 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [134 kB] Fetched 234 kB in 0s (827 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libpkgconf3 pkgconf pkgconf-bin Suggested packages: m4-doc The following NEW packages will be installed: libpkgconf3 m4 pkg-config pkgconf pkgconf-bin 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 392 kB of archives. After this operation, 969 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 392 kB in 0s (6099 kB/s) Selecting previously unselected package libpkgconf3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18743 files and directories currently installed.) Preparing to unpack .../libpkgconf3_1.8.1-1_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../pkgconf-bin_1.8.1-1_amd64.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../pkgconf_1.8.1-1_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-1) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../pkg-config_1.8.1-1_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-1) ... Setting up m4 (1.4.19-3) ... Setting up libpkgconf3:amd64 (1.8.1-1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up pkg-config:amd64 (1.8.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... 2024-01-29 19:24.38 ---> using "d64ddc7053307a6e5bac376e2af0af138c2728532db1941a0e2c7ed3dcb6923f" from cache /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "opam pin -ny https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 && opam depext -iy voodoo-prep")) [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo: git] [voodoo] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 This will pin the following packages: voodoo-prep, voodoo-lib, voodoo-gen, voodoo-do. Continue? [Y/n] y Package voodoo-prep does not exist, create as a NEW package? [Y/n] y [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev: git] [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-prep is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-lib does not exist, create as a NEW package? [Y/n] y [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev: git] [voodoo-lib.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-lib is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-gen does not exist, create as a NEW package? [Y/n] y [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev: git] [voodoo-gen.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-gen is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) Package voodoo-do does not exist, create as a NEW package? [Y/n] y [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev: git] [voodoo-do.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 voodoo-do is now pinned to git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 (version ~dev) # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # No extra OS packages requirements found. # All required OS packages found. # Now letting opam install the packages <><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><> [voodoo-prep.~dev] no changes from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 The following actions will be performed: - install ocamlbuild 0.14.3 [required by bos] - install cmdliner 1.2.0 [required by voodoo-prep] - install dune 3.13.0 [required by voodoo-prep] - install ocamlfind 1.9.6 [required by bos] - install seq base [required by re] - install stdlib-shims 0.3.0 [required by ocamlgraph] - install opam-file-format 2.1.6 [required by opam-format] - install cppo 1.6.9 [required by opam-core] - install topkg 1.0.7 [required by bos] - install re 1.11.0 [required by opam-format] - install ocamlgraph 2.1.0 [required by opam-core] - install rresult 0.7.0 [required by bos] - install fmt 0.9.0 [required by bos] - install astring 0.8.5 [required by bos] - install opam-core 2.1.5 [required by opam-format] - install logs 0.7.0 [required by bos] - install fpath 0.7.3 [required by voodoo-prep] - install opam-format 2.1.5 [required by voodoo-prep] - install bos 0.2.1 [required by voodoo-prep] - install voodoo-prep ~dev* ===== 20 to install ===== <><> Gathering sources ><><><><><><><><><><><><><><><><><><><><><><><><><><><><> [astring.0.8.5] found in cache [bos.0.2.1] found in cache [cmdliner.1.2.0] found in cache [cppo.1.6.9] found in cache [dune.3.13.0] found in cache [fmt.0.9.0] found in cache [fpath.0.7.3] found in cache [logs.0.7.0] found in cache [ocamlbuild.0.14.3] found in cache [ocamlfind.1.9.6] found in cache [ocamlgraph.2.1.0] found in cache [opam-core.2.1.5] found in cache [opam-file-format.2.1.6] found in cache [opam-format.2.1.5] found in cache [re.1.11.0] found in cache [rresult.0.7.0] found in cache [stdlib-shims.0.3.0] found in cache [topkg.1.0.7] found in cache [voodoo-prep.~dev] synchronised from git+https://github.com/ocaml-doc/voodoo.git#67ccabec49b5f4d24147839291fcae7c19d3e8c9 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> installed seq.base -> installed cmdliner.1.2.0 -> installed ocamlfind.1.9.6 -> installed ocamlbuild.0.14.3 -> installed topkg.1.0.7 -> installed rresult.0.7.0 -> installed fmt.0.9.0 -> installed astring.0.8.5 -> installed fpath.0.7.3 -> installed logs.0.7.0 -> installed bos.0.2.1 -> installed dune.3.13.0 -> installed stdlib-shims.0.3.0 -> installed opam-file-format.2.1.6 -> installed re.1.11.0 -> installed cppo.1.6.9 -> installed ocamlgraph.2.1.0 -> installed opam-core.2.1.5 -> installed opam-format.2.1.5 -> installed voodoo-prep.~dev Done. # Run eval $(opam env) to update the current shell environment 2024-01-29 19:24.38 ---> using "d95d2426ec6638d4946232810cc7377b78e0b12578cf93755f6aecdc254fcd78" from cache /home/opam: (run (shell "cp $(opam config var bin)/voodoo-prep /home/opam")) 2024-01-29 19:24.38 ---> using "200b9dc9bbc6b05727626f4e73227cdcfa87e5df3b69dfe480b404d6323d60f8" from cache 2024-01-29 19:24.38 --> finished "tools" (from ocaml/opam:debian-12-ocaml-4.14@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef) Unable to find image 'ocaml/opam:debian-12-ocaml-4.14@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef' locally docker.io/ocaml/opam@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef: Pulling from ocaml/opam 82e8c0c7d92b: Pulling fs layer 82e8c0c7d92b: Verifying Checksum 82e8c0c7d92b: Download complete 82e8c0c7d92b: Pull complete Digest: sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef Status: Downloaded newer image for ocaml/opam@sha256:8e390dbf29f7a115e5c8098ffb1a3c7234a873cf738a5ae22f3a4846122db9ef 2024-01-29 19:24.38 ---> using "1f16aa8fbc1a229ca02cdf7d8b4234eb4608a9074cec5292a9e72517b48fb577" from cache /: (user (uid 1000) (gid 1000)) /: (workdir /home/opam) /home/opam: (run (shell "sudo chown opam:opam /home/opam")) 2024-01-29 19:24.38 ---> using "258ae3900365106d3b475f7327e1977f1a9ae54d4b6cd6e024f1ed5ef4f3381c" from cache /home/opam: (run (shell "sudo mkdir /src")) 2024-01-29 19:24.38 ---> using "50a061015e57b489daec5893a083c81b93ec0b29b89dbcf9b55da6d4003431c6" from cache /home/opam: (copy (src packages) (dst /src/packages)) 2024-01-29 19:24.39 ---> using "1b10b872b3f7ebf800e3cb1b0444864112c70998fc32e5665666d390247ebd56" from cache /home/opam: (copy (src repo) (dst /src/repo)) 2024-01-29 19:24.39 ---> using "0dd53112d65cc9755546365c18bfda1c737fd0703958d27036226b52bcc1b070" from cache /home/opam: (run (network host) (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam && opam init --reinit -ni")) Configuring from /home/opam/.opamrc and then from built-in defaults. Checking for available remotes: rsync and local, git. - you won't be able to use mercurial repositories unless you install the hg command on your system. - you won't be able to use darcs repositories unless you install the darcs command on your system. This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted. You may want to back it up before going further. Continue? [Y/n] y Format upgrade done. <><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><> [default] synchronised from file:///home/opam/opam-repository 2024-01-29 19:24.39 ---> using "cff84ad16c016415d167faaf75b904f19dcdf195e061f567483c3d5bab85e732" from cache /home/opam: (run (shell "opam repo remove default && opam repo add opam /src")) Repositories removed from the selections of switch 4.14. Use '--all' to forget about them altogether. [opam] Initialised [NOTE] Repository opam has been added to the selections of switch 4.14 only. Run `opam repository add opam --all-switches|--set-default' to use it in all existing switches, or in newly created switches, respectively. 2024-01-29 19:24.39 ---> using "4bdfad591da872fbb23847756dd51a2a2166b7dfebb3980b4f5b543ba0228608" from cache /home/opam: (copy (from (build tools)) (src /home/opam/voodoo-prep) (dst /home/opam/)) 2024-01-29 19:24.39 ---> using "938cea4f144fb1e9840b4cde1c06a268c654881e7746e5fffb6fd0ae63d4e975" from cache /home/opam: (comment "no build system") /home/opam: (env DUNE_CACHE disabled) /home/opam: (env DUNE_CACHE_TRANSPORT direct) /home/opam: (env DUNE_CACHE_DUPLICATION copy) /home/opam: (run (cache (opam-archives (target /home/opam/.opam/download-cache)) (opam-dune-cache (target /home/opam/.cache/dune))) (network host) (shell "(sudo apt update) && ((opam depext -viy orsvm_e1071.3.0.0 jbuilder.1.0+beta20.2 conf-r.1.0.0 2>&1 | tee ~/opam.err.log) || echo 'Failed to install all packages')")) WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Hit:1 http://deb.debian.org/debian bookworm InRelease Get:2 http://deb.debian.org/debian bookworm-updates InRelease [52.1 kB] Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB] Get:4 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [134 kB] Fetched 234 kB in 0s (915 kB/s) Reading package lists... Building dependency tree... Reading state information... All packages are up to date. Opam plugin "depext" may require upgrading/reinstalling. Reinstall the plugin on the current switch? [Y/n] y The following actions will be performed: - recompile opam-depext 1.2.1-1 <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> -> retrieved opam-depext.1.2.1-1 (cached) -> removed opam-depext.1.2.1-1 -> installed opam-depext.1.2.1-1 Done. <><> opam-depext.1.2.1-1 installed successfully <><><><><><><><><><><><><><><><> => opam-depext is unnecessary when used with opam >= 2.1. Please use opam install directly instead # Run eval $(opam env) to update the current shell environment <><> Carrying on to "opam depext -viy orsvm_e1071.3.0.0 jbuilder.1.0+beta20.2 conf-r.1.0.0" You are using opam 2.1+, where external dependency handling has been integrated: consider calling opam directly, the 'depext' plugin interface is provided for backwards compatibility only # Detecting depexts using vars: arch=x86_64, os=linux, os-distribution=debian, os-family=debian # The following system packages are needed: r-base-core The following actions will be performed: - install conf-r 1.0.0 - install jbuilder 1.0+beta20.2 - install orsvm_e1071 3.0.0 ===== 3 to install ===== The following system packages will first need to be installed: r-base-core <><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><> Let opam run your package manager to install the required system packages? (answer 'n' for other options) [Y/n] y + /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "r-base-core" - debconf: delaying package configuration, since apt-utils is not installed - Selecting previously unselected package libdbus-1-3:amd64. - (Reading database ... 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Setting up libtry-tiny-perl (0.31-2) ... - Setting up libsensors-config (1:3.6.0-7.1) ... - Setting up libxxf86dga1:amd64 (2:1.1.5-1) ... - Setting up perl-openssl-defaults:amd64 (7+b1) ... - Setting up libencode-locale-perl (1.05-3) ... - Setting up libxcb-shm0:amd64 (1.15-1) ... - Setting up libcairo2:amd64 (1.16.0-7) ... - Setting up libpcre2-16-0:amd64 (10.42-1) ... - Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... - Setting up libxcb-present0:amd64 (1.15-1) ... - Setting up libpcre3:amd64 (2:8.39-15) ... - Setting up zip (3.0-13) ... - Setting up libfontenc1:amd64 (1:1.1.4-1) ... - Setting up libz3-4:amd64 (4.8.12-3.1) ... - Setting up libpcre2-32-0:amd64 (10.42-1) ... - Setting up libblas3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode - Setting up libglib2.0-data (2.74.6-2) ... - Setting up libpkgconf3:amd64 (1.8.1-1) ... - Setting up libgles2:amd64 (1.6.0-1) ... - Setting up libdata-dump-perl (1.25-1) ... - Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-2) ... - Setting up libxfixes3:amd64 (1:6.0.0-2) ... - Setting up libxcb-sync1:amd64 (1.15-1) ... - Setting up libipc-system-simple-perl (1.30-2) ... - Setting up libxml-xpathengine-perl (0.14-2) ... - Setting up libncurses6:amd64 (6.4-4) ... - Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... - Setting up libfribidi0:amd64 (1.0.8-2.1) ... - Setting up libxinerama1:amd64 (2:1.1.4-3) ... - Setting up libxv1:amd64 (2:1.0.11-1.1) ... - Setting up libpcre32-3:amd64 (2:8.39-15) ... - Setting up libio-html-perl (1.004-3) ... - Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... - Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... - Setting up icu-devtools (72.1-3) ... - Setting up pkgconf-bin (1.8.1-1) ... - Setting up libsensors5:amd64 (1:3.6.0-7.1) ... - Setting up libglapi-mesa:amd64 (22.3.6-1+deb12u1) ... - Setting up libgfortran5:amd64 (12.2.0-14) ... - Setting up libtimedate-perl (2.3300-2) ... - Setting up libregexp-ipv6-perl (0.03-3) ... - Setting up liblzma-dev:amd64 (5.4.1-0.2) ... - Setting up libxcb-dri2-0:amd64 (1.15-1) ... - Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... - Setting up libpcre2-posix3:amd64 (10.42-1) ... - Setting up sensible-utils (0.0.17+nmu1) ... - Setting up libxshmfence1:amd64 (1.3-1) ... - Setting up libxcb-randr0:amd64 (1.15-1) ... - Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ... - Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... - Setting up libthai-data (0.1.29-1) ... - Setting up libxss1:amd64 (1:1.2.3-1) ... - Setting up libxkbfile1:amd64 (1:1.1.0-1) ... - Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... - Setting up libdrm-common (2.4.114-1) ... - Setting up libelf1:amd64 (0.188-2.1) ... - Setting up libxcomposite1:amd64 (1:0.4.5-1) ... - Setting up libicu-dev:amd64 (72.1-3) ... - Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... - Setting up xdg-utils (1.1.3-4.1) ... - update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode - Setting up liburi-perl (5.17-1) ... - Setting up dbus-bin (1.14.10-1~deb12u1) ... - Setting up libx11-protocol-perl (0.56-9) ... - Setting up libblas-dev:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode - Setting up libbz2-dev:amd64 (1.0.8-5+b1) ... - Setting up libwayland-client0:amd64 (1.21.0-1) ... - Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... - Setting up libpcrecpp0v5:amd64 (2:8.39-15) ... - Setting up libice6:amd64 (2:1.0.10-1) ... - Setting up libhttp-date-perl (6.05-2) ... - Setting up liblapack3:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode - Setting up libxft2:amd64 (2.3.6-1) ... - Setting up libncurses-dev:amd64 (6.4-4) ... - Setting up libfile-basedir-perl (0.09-2) ... - Setting up libfile-listing-perl (6.15-1) ... - Setting up libpcre2-dev:amd64 (10.42-1) ... - Setting up libpcre3-dev:amd64 (2:8.39-15) ... - Setting up libxtst6:amd64 (2:1.2.3-1.1) ... - Setting up libtk8.6:amd64 (8.6.13-2) ... - Setting up libxcursor1:amd64 (1:1.2.1-1) ... - Setting up libpng-dev:amd64 (1.6.39-2) ... - Setting up libjpeg-dev:amd64 (1:2.1.5-2) ... - Setting up libnet-http-perl (6.22-1) ... - Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... - Setting up dbus-daemon (1.14.10-1~deb12u1) ... - Setting up libreadline-dev:amd64 (8.2-1.3) ... - Setting up pkgconf:amd64 (1.8.1-1) ... - Setting up libthai0:amd64 (0.1.29-1) ... - Setting up gfortran-12 (12.2.0-14) ... - Setting up dbus (1.14.10-1~deb12u1) ... - invoke-rc.d: could not determine current runlevel - invoke-rc.d: policy-rc.d denied execution of start. - Setting up shared-mime-info (2.2-1) ... - Setting up liblapack-dev:amd64 (3.11.0-2) ... - update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode - Setting up pkg-config:amd64 (1.8.1-1) ... - Setting up ucf (3.0043+nmu1) ... - Setting up libfile-desktopentry-perl (0.22-3) ... - Setting up libwww-robotrules-perl (6.02-1) ... - Setting up libdrm2:amd64 (2.4.114-1+b1) ... - Setting up libhtml-parser-perl:amd64 (3.81-1) ... - Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... - Setting up libncurses5-dev:amd64 (6.4-4) ... - Setting up libsm6:amd64 (2:1.2.3-1) ... - Setting up libio-socket-ssl-perl (2.081-2) ... - Setting up libhttp-message-perl (6.44-1) ... - Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... - Setting up libhtml-form-perl (6.11-1) ... - Setting up libfile-mimeinfo-perl (0.33-1) ... - Setting up libpaper1:amd64 (1.1.29) ... - - Creating config file /etc/papersize with new version - Setting up libhttp-negotiate-perl (6.01-2) ... - Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... - Setting up libgbm1:amd64 (22.3.6-1+deb12u1) ... - Setting up libhttp-cookies-perl (6.10-1) ... - Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... - Setting up libhtml-tree-perl (5.07-3) ... - Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... - Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... - Setting up libhtml-format-perl (2.16-2) ... - Setting up libpaper-utils (1.1.29) ... - Setting up gfortran (4:12.2.0-3) ... - update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode - update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode - Setting up libegl-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up libnet-smtp-ssl-perl (1.04-2) ... - Setting up libmailtools-perl (2.21-2) ... - Setting up libxt6:amd64 (1:1.2.1-1.1) ... - Setting up libhttp-daemon-perl (6.16-1) ... - Setting up libegl1:amd64 (1.6.0-1) ... - Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... - Setting up libxmu6:amd64 (2:1.1.3-3) ... - Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... - Setting up libglx0:amd64 (1.6.0-1) ... - Setting up libxaw7:amd64 (2:1.0.14-1) ... - Setting up x11-xserver-utils (7.7+9+b1) ... - Setting up libgl1:amd64 (1.6.0-1) ... - Setting up r-base-core (4.2.2.20221110-2) ... - - Creating config file /etc/R/Renviron with new version - Setting up r-cran-lattice (0.20-45-3) ... - Setting up r-cran-nlme (3.1.162-1) ... - Setting up zutty (0.14.0.20230218+dfsg1-1) ... - update-alternatives: using /usr/bin/zutty to provide /usr/bin/x-terminal-emulator (x-terminal-emulator) in auto mode - Setting up r-cran-cluster (2.1.4-1) ... - Setting up x11-utils (7.7+5) ... - Setting up r-cran-nnet (7.3-18-1) ... - Setting up r-cran-codetools (0.2-19-1) ... - Setting up r-cran-boot (1.3-28.1-1) ... - Setting up r-base-dev (4.2.2.20221110-2) ... - Setting up r-cran-spatial (7.3-16-1) ... - Setting up r-cran-mass (7.3-58.2-1) ... - Setting up r-cran-foreign (0.8.84-1) ... - Setting up r-cran-matrix (1.5-3-1) ... - Setting up r-cran-kernsmooth (2.23-20-1) ... - Setting up r-cran-mgcv (1.8-41-1) ... - Setting up r-cran-class (7.3-21-1) ... - Setting up r-cran-survival (3.5-3-1) ... - Setting up r-cran-rpart (4.1.19-1) ... - Setting up r-recommended (4.2.2.20221110-2) ... - Setting up liblwp-protocol-https-perl (6.10-1) ... - Setting up libwww-perl (6.68-1) ... - Setting up libxml-parser-perl (2.46-4) ... - Setting up libxml-twig-perl (1:3.52-2) ... - Setting up libnet-dbus-perl (1.2.0-2) ... - Processing triggers for libc-bin (2.36-9+deb12u3) ... <><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><> Processing 2/9: Processing 3/9: Processing 4/9: [conf-r: R CMD] -> retrieved jbuilder.1.0+beta20.2 (cached) Processing 5/9: [conf-r: R CMD] [jbuilder: ocaml configure.ml] -> retrieved orsvm_e1071.3.0.0 (cached) Processing 5/9: [conf-r: R CMD] [jbuilder: ocaml bootstrap.ml] -> compiled conf-r.1.0.0 Processing 5/9: [jbuilder: ocaml bootstrap.ml] -> installed conf-r.1.0.0 Processing 6/9: [jbuilder: ocaml bootstrap.ml] + /home/opam/.opam/4.14/bin/ocaml "bootstrap.ml" (CWD=/home/opam/.opam/4.14/.opam-switch/build/jbuilder.1.0+beta20.2) - File "./bootstrap.ml", line 185, characters 29-41: - 185 | let base, ext = String.break base i in - ^^^^^^^^^^^^ - Warning 6 [labels-omitted]: label pos was omitted in the application of this function. - File "./bootstrap.ml", line 190, characters 28-40: - 190 | let a, b = String.break ext i in - ^^^^^^^^^^^^ - Warning 6 [labels-omitted]: label pos was omitted in the application of this function. - '/home/opam/.opam/4.14/bin/ocamllex.opt' -q src/meta_lexer.mll - '/home/opam/.opam/4.14/bin/ocamldep.opt' -modules src/action.ml src/action_intf.ml src/arg_spec.ml src/artifacts.ml src/bin.ml src/binary_kind.ml src/build.ml src/build_interpret.ml src/build_system.ml src/clflags.ml src/cm_kind.ml src/colors.ml src/config.ml src/context.ml src/dep_path.ml src/env.ml src/errors.ml src/exe.ml src/file_tree.ml src/findlib.ml src/gen_meta.ml src/gen_rules.ml src/glob_lexer.boot.ml src/import.ml src/inline_tests.ml src/install.ml src/install_rules.ml src/installed_dune_file.ml src/interned.ml src/jbuild.ml src/jbuild_load.ml vendor/boot/jbuilder_opam_file_format.ml vendor/boot/jbuilder_re.ml src/js_of_ocaml_rules.ml src/lib.ml src/loc.ml src/log.ml src/main.ml src/menhir.ml src/merlin.ml src/meta.ml src/meta_lexer.ml src/ml_kind.ml src/mode.ml src/module.ml src/module_compilation.ml src/modules_partitioner.ml src/ocaml_flags.ml src/ocamldep.ml src/odoc.boot.ml src/opam_file.ml src/ordered_set_lang.ml src/package.ml src/path.ml src/per_item.ml src/preprocessing.ml src/print_diff.ml src/process.ml src/report_error.ml src/scheduler.ml src/scope.ml src/setup.boot.ml src/sexp.ml src/string_with_vars.ml src/sub_system.ml src/sub_system_intf.ml src/sub_system_name.ml src/super_context.ml src/syntax.ml src/top_closure.ml src/utils.ml src/utop.ml src/variant.ml src/vfile_kind.ml src/watermarks.ml src/workspace.ml > boot-depends.txt - '/home/opam/.opam/4.14/bin/ocamldep.opt' -modules src/stdune/caml/caml.ml src/stdune/caml/result.ml src/stdune/caml/result_compat.ml > boot-depends.txt - '/home/opam/.opam/4.14/bin/ocamldep.opt' -modules src/fiber/fiber.ml > boot-depends.txt - '/home/opam/.opam/4.14/bin/ocamldep.opt' -modules src/ocaml-config/ocaml_config.ml > boot-depends.txt - '/home/opam/.opam/4.14/bin/ocamldep.opt' -modules src/stdune/stdune.ml src/stdune/ansi_color.ml src/stdune/array.ml src/stdune/char.ml src/stdune/common.ml src/stdune/comparable.ml src/stdune/either.ml src/stdune/exn.ml src/stdune/filename.ml src/stdune/hashtbl.ml src/stdune/import.ml src/stdune/int.ml src/stdune/io.ml src/stdune/list.ml src/stdune/map.ml src/stdune/map_intf.ml src/stdune/option.ml src/stdune/or_exn.ml src/stdune/ordering.ml src/stdune/pp.ml src/stdune/result.ml src/stdune/set.ml src/stdune/set_intf.ml src/stdune/staged.ml src/stdune/string.ml > boot-depends.txt - '/home/opam/.opam/4.14/bin/ocamldep.opt' -modules src/usexp/usexp.ml src/usexp/parser_automaton_internal.ml src/usexp/sexp_ast.ml src/usexp/table.ml > boot-depends.txt - '/home/opam/.opam/4.14/bin/ocamldep.opt' -modules src/xdg/xdg.ml > boot-depends.txt - '/home/opam/.opam/4.14/bin/ocamlc.opt' -g -w -40 -o boot.exe unix.cma boot.ml - File "src/stdune/caml/result.ml", line 4, characters 7-17: - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "src/stdune/caml/result.mli", line 6, characters 7-17: - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "src/stdune/pp.ml", line 98, characters 7-18: - Alert deprecated: Stdlib.Format.pp_open_tag - Use Format.pp_open_stag. - File "src/stdune/pp.ml", line 100, characters 7-19: - Alert deprecated: Stdlib.Format.pp_close_tag - Use Format.pp_close_stag. - File "src/stdune/pp.ml", line 103, characters 18-48: - Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions - Use Format.pp_get_formatter_stag_functions. - File "src/stdune/pp.ml", line 105, characters 6-36: - Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions - This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions. - File "src/stdune/io.ml", line 1, characters 11-21: - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - File "src/usexp/usexp.ml", line 209, characters 15-52: - Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions - Use Format.pp_get_formatter_stag_functions. - File "src/usexp/usexp.ml", line 210, characters 2-39: - Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions - This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions. - File "src/colors.ml", line 105, characters 18-48: - Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions - Use Format.pp_get_formatter_stag_functions. - File "src/colors.ml", line 107, characters 6-36: - Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions - This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions. - File "src/super_context.ml", line 72, characters 7-11: - Warning 16 [unerasable-optional-argument]: this optional argument cannot be erased. Processing 6/9: [jbuilder: ./boot.exe 255] + /home/opam/.opam/4.14/.opam-switch/build/jbuilder.1.0+beta20.2/./boot.exe "-j" "255" (CWD=/home/opam/.opam/4.14/.opam-switch/build/jbuilder.1.0+beta20.2) - ocamlc src/stdune/caml/.caml.objs/caml__Result.{cmi,cmti} - File "src/stdune/caml/result.mli", line 6, characters 7-17: - 6 | open Pervasives - ^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - ocamlopt src/stdune/caml/.caml.objs/caml__Result.{cmx,o} - File "src/stdune/caml/result.ml", line 4, characters 7-17: - 4 | open Pervasives - ^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - ocamlopt src/stdune/.stdune.objs/stdune__Io.{cmx,o} - File "src/stdune/io.ml", line 1, characters 11-21: - 1 | module P = Pervasives - ^^^^^^^^^^ - Alert deprecated: module Stdlib.Pervasives - Use Stdlib instead. - - If you need to stay compatible with OCaml < 4.07, you can use the - stdlib-shims library: https://github.com/ocaml/stdlib-shims - ocamlopt src/stdune/.stdune.objs/stdune__Pp.{cmx,o} - File "src/stdune/pp.ml", line 98, characters 7-18: - 98 | pp_open_tag ppf (embed_tag ~opening ~closing); - ^^^^^^^^^^^ - Alert deprecated: Stdlib.Format.pp_open_tag - Use Format.pp_open_stag. - File "src/stdune/pp.ml", line 100, characters 7-19: - 100 | pp_close_tag ppf () - ^^^^^^^^^^^^ - Alert deprecated: Stdlib.Format.pp_close_tag - Use Format.pp_close_stag. - File "src/stdune/pp.ml", line 103, characters 18-48: - 103 | let funcs = pp_get_formatter_tag_functions ppf () in - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions - Use Format.pp_get_formatter_stag_functions. - File "src/stdune/pp.ml", line 105, characters 6-36: - 105 | pp_set_formatter_tag_functions ppf - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions - This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions. - ocamlopt src/usexp/.usexp.objs/usexp.{cmx,o} - File "src/usexp/usexp.ml", line 209, characters 15-52: - 209 | let tfuncs = Format.pp_get_formatter_tag_functions ppf () in - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions - Use Format.pp_get_formatter_stag_functions. - File "src/usexp/usexp.ml", line 210, characters 2-39: - 210 | Format.pp_set_formatter_tag_functions ppf - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions - This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions. - ocamlopt src/.jbuilder.objs/jbuilder__Colors.{cmx,o} - File "src/colors.ml", line 105, characters 18-48: - 105 | let funcs = pp_get_formatter_tag_functions ppf () in - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - Alert deprecated: Stdlib.Format.pp_get_formatter_tag_functions - Use Format.pp_get_formatter_stag_functions. - File "src/colors.ml", line 107, characters 6-36: - 107 | pp_set_formatter_tag_functions ppf - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - Alert deprecated: Stdlib.Format.pp_set_formatter_tag_functions - This function will erase non-string tag formatting functions. Use Format.pp_set_formatter_stag_functions. - ocamlopt src/.jbuilder.objs/jbuilder__Super_context.{cmx,o} - File "src/super_context.ml", line 72, characters 7-11: - 72 | ?host - ^^^^ - Warning 16 [unerasable-optional-argument]: this optional argument cannot be erased. -> compiled jbuilder.1.0+beta20.2 -> installed jbuilder.1.0+beta20.2 Processing 8/9: [orsvm_e1071: R CMD] + /usr/bin/R "CMD" "BATCH" "install_e1071.r" (CWD=/home/opam/.opam/4.14/.opam-switch/build/orsvm_e1071.3.0.0) [ERROR] The compilation of orsvm_e1071.3.0.0 failed at "R CMD BATCH install_e1071.r". #=== ERROR while compiling orsvm_e1071.3.0.0 ==================================# # context 2.1.5 | linux/x86_64 | ocaml-base-compiler.4.14.1 | file:///src # path ~/.opam/4.14/.opam-switch/build/orsvm_e1071.3.0.0 # command /usr/bin/R CMD BATCH install_e1071.r # exit-code 1 # env-file ~/.opam/log/orsvm_e1071-113-1d06ad.env # output-file ~/.opam/log/orsvm_e1071-113-1d06ad.out <><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><> +- The following actions failed | - build orsvm_e1071 3.0.0 +- +- The following changes have been performed | - install conf-r 1.0.0 | - install jbuilder 1.0+beta20.2 +- <><> orsvm_e1071.3.0.0 troubleshooting ><><><><><><><><><><><><><><><><><><><><> => Please interact with R to install needed things in user-space: R install.packages('e1071', repos='http://cran.r-project.org') install.packages('svmpath', repos='http://cran.r-project.org') # Run eval $(opam env) to update the current shell environment The former state can be restored with: /usr/bin/opam switch import "/home/opam/.opam/4.14/.opam-switch/backup/state-20240129192527.export" 'opam --cli=2.1 install orsvm_e1071.3.0.0 jbuilder.1.0+beta20.2 conf-r.1.0.0 --verbose --yes --confirm-level=unsafe-yes' failed. 2024-01-29 19:26.05 ---> saved as "3bead9d68b3d91ada92ff48e62316e7d53c3eef3b253bf5ff76800920937ace0" /home/opam: (run (shell "opam exec -- ~/voodoo-prep -u orsvm_e1071:681da539be7e23c22e1f775c7d7e9add,conf-r:d41d8cd98f00b204e9800998ecf8427e")) 2024-01-29 19:26.07 ---> saved as "83136f18246c3d8fab031ace7e8ca6f17b3ae879cdccb44cf3443382505a6051" /home/opam: (run (network host) (secrets (ssh_privkey (target /home/opam/.ssh/id_rsa)) (ssh_pubkey (target /home/opam/.ssh/id_rsa.pub)) (ssh_config (target /home/opam/.ssh/config))) (shell "(echo '0.361705') && (for DATA in prep/universes/d41d8cd98f00b204e9800998ecf8427e/conf-r/1.0.0,conf-r.1.0.0-d41d8cd98f00b204e9800998ecf8427e,conf-r.1.0.0 prep/universes/681da539be7e23c22e1f775c7d7e9add/orsvm_e1071/3.0.0,orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add,orsvm_e1071.3.0.0; do IFS=\",\"; set -- $DATA; ([ -d $1 ] || (echo \"FAILED:$2\" && mkdir -p $1 && cp ~/opam.err.log $1 && opam show $3 --raw > $1/opam)) && (shopt -s nullglob && ((tar -cvf $1.tar $1/* && rm -R $1/* && mv $1.tar $1/content.tar) || (echo 'Empty directory'))) done) && (for DATA in prep/universes/d41d8cd98f00b204e9800998ecf8427e/conf-r/1.0.0,conf-r.1.0.0-d41d8cd98f00b204e9800998ecf8427e,conf-r.1.0.0 prep/universes/681da539be7e23c22e1f775c7d7e9add/orsvm_e1071/3.0.0,orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add,orsvm_e1071.3.0.0; do IFS=\",\"; set -- $DATA; rsync -aR --no-p ./$1 docs.ci.ocaml.org:/data/.; done) && (for DATA in prep/universes/d41d8cd98f00b204e9800998ecf8427e/conf-r/1.0.0,conf-r.1.0.0-d41d8cd98f00b204e9800998ecf8427e,conf-r.1.0.0 prep/universes/681da539be7e23c22e1f775c7d7e9add/orsvm_e1071/3.0.0,orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add,orsvm_e1071.3.0.0; do IFS=\",\"; set -- $DATA; HASH=$((sha256sum $1/content.tar | cut -d \" \" -f 1) || echo -n 'empty'); printf \"HASHES:$2:$HASH\\n\"; done)")) 0.361705 prep/universes/d41d8cd98f00b204e9800998ecf8427e/conf-r/1.0.0/opam FAILED:orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add prep/universes/681da539be7e23c22e1f775c7d7e9add/orsvm_e1071/3.0.0/opam prep/universes/681da539be7e23c22e1f775c7d7e9add/orsvm_e1071/3.0.0/opam.err.log Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. Warning: Permanently added '[docs.ci.ocaml.org]:2222' (ED25519) to the list of known hosts. HASHES:conf-r.1.0.0-d41d8cd98f00b204e9800998ecf8427e:012e28a3cc58fee9ac4b298f801fc405601b1fda1a4264b4ff32e633019174f9 HASHES:orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add:71e857e7a0912643b56afe11426dae13792c3efe75d6ad3a109fcf62fc335fc0 2024-01-29 19:26.08 ---> saved as "8794ef6a168ced04c2837959a3d23f9ad9da0b611b4930a0d87483d62025f664" Job succeeded 2024-01-29 19:33.37: Failed: orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add 2024-01-29 19:33.37: orsvm_e1071.3.0.0-681da539be7e23c22e1f775c7d7e9add -> 71e857e7a0912643b56afe11426dae13792c3efe75d6ad3a109fcf62fc335fc0 2024-01-29 19:33.37: conf-r.1.0.0-d41d8cd98f00b204e9800998ecf8427e -> 012e28a3cc58fee9ac4b298f801fc405601b1fda1a4264b4ff32e633019174f9 2024-01-29 19:33.37: Job succeeded